{"id":"W2951324712","doi":"10.1101/521120","title":"Effect of ceftiofur cessation and substitution with lincomycin-spectinomycin on extended-spectrum-beta-lactamase/AmpC genes and multidrug resistance in <i>E. coli</i> from a Canadian broiler production pyramid","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Agriculture and Agri-Food Canada; Université de Montréal","keywords":"Ceftiofur; Spectinomycin; Lincomycin; Microbiology; Cephalosporin; Antimicrobial; Biology; Escherichia coli; Multiple drug resistance; Antibiotic resistance; Penicillin; Drug resistance; Antibiotics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002637883,0.0003530714,0.0004674978,0.0002924772,0.0004586031,0.0004809301,0.0005370601,0.0004034338,0.001208395],"category_scores_gemma":[0.0004941525,0.000158484,0.0004011333,0.0002231824,0.000358738,0.0001659228,0.0002074271,0.0004782467,0.0001870649],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002105824,"about_ca_system_score_gemma":0.001743322,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.26061,"about_ca_topic_score_gemma":0.3122149,"domain_scores_codex":[0.9996982,0.00002653133,0.00001719579,0.0000734057,0.00008764557,0.00009719038],"domain_scores_gemma":[0.9992951,0.0001315778,0.00009247495,0.00003049055,0.0001951971,0.000255077],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01187969,0.002651729,0.04151784,0.0001946098,0.0001645084,0.0006721828,0.0003282512,0.0007506758,0.9251964,0.00004202035,0.0006602656,0.01594176],"study_design_scores_gemma":[0.0001747015,0.02370232,0.6161113,0.00003031707,0.0002547534,0.000417294,0.0006607882,0.002155421,0.3522824,0.00001746862,0.00413021,0.00006307501],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991949,0.0001677809,0.00003569336,0.00002989074,0.000007118793,0.00001728855,0.0002454684,0.000005683635,0.0002962112],"genre_scores_gemma":[0.9967308,0.0001939353,0.0002629682,0.00007588811,0.00000696895,0.00001355133,0.0008802692,0.000005567418,0.001829962],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.73939,"threshold_uncertainty_score":0.5181862,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004908367684821723,"score_gpt":0.2007533677705398,"score_spread":0.195845000085718,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}