{"id":"W2951337360","doi":"10.1099/mgen.0.000142","title":"Vibrio cholerae genomic diversity within and between patients","year":2017,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Institute of Diabetes and Digestive and Kidney Diseases; International Centre for Diarrhoeal Disease Research, Bangladesh; Canada Research Chairs; Styrelsen för Internationellt Utvecklingssamarbete; National Institute of Allergy and Infectious Diseases; Global Affairs Canada; Department for International Development; Robert Wood Johnson Foundation","keywords":"Vibrio cholerae; Cholera; Biology; Horizontal gene transfer; Cholera toxin; Genetics; Plasmid; Transmission (telecommunications); Gene; Population; El Tor; Genetic diversity; Point mutation; Genome; Microbiology; Mutation; Bacteria; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002848795,0.0001832774,0.000365352,0.0004693329,0.0004023993,0.0006553212,0.0001703424,0.0004172274,0.001110039],"category_scores_gemma":[0.002603794,0.000138509,0.0001550625,0.0004898616,0.0004829676,0.0002946642,0.0006841994,0.0003418703,0.0001431056],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003208521,"about_ca_system_score_gemma":0.0001652667,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001718216,"about_ca_topic_score_gemma":0.001381449,"domain_scores_codex":[0.9991634,0.0001863637,0.00007685979,0.0003308769,0.0001107428,0.0001317537],"domain_scores_gemma":[0.9992519,0.0002377047,0.0002047625,0.00007757475,0.00009198351,0.0001361246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004307658,0.00002646029,0.9775733,0.00002493673,0.00006339618,0.0006958343,0.001358514,0.0001440992,0.0122453,0.0001026411,0.0001884947,0.007146422],"study_design_scores_gemma":[0.00001367888,0.0002475209,0.9927667,0.0000136953,0.00003226879,0.002715591,0.001271317,0.000246039,0.00147544,0.0001852263,0.001014182,0.00001835789],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992762,0.0001089689,0.0001350218,0.0000297166,0.000001938282,0.000007362372,0.0001903368,0.000002627021,0.0002479322],"genre_scores_gemma":[0.9995756,0.00004753258,0.00009412906,0.00003030745,0.000002863404,0.000007316324,0.0001726041,0.000002432442,0.00006738164],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001718216,"threshold_uncertainty_score":0.003713489,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01789418367661072,"score_gpt":0.2468777602498195,"score_spread":0.2289835765732088,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}