{"id":"W2951337801","doi":"10.1101/668343","title":"Phylogenetic and structural diversity of aromatically dense pili from environmental metagenomes","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"NASA Astrobiology Institute","keywords":"Pilus; Biology; Pilin; Horizontal gene transfer; Fimbriae Proteins; Fimbria; Phylogenetic diversity; Microbiology; Phylogenetics; Gene; Biochemistry; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001874061,0.0003395189,0.0004124547,0.00003987689,0.0001188957,0.0000485667,0.0003928679,0.0002766763,0.0006868929],"category_scores_gemma":[0.00002338086,0.0003296561,0.00009778672,0.00006875626,0.0002870292,0.00008724018,0.002265807,0.0002473283,0.0001010315],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001839449,"about_ca_system_score_gemma":0.00002464614,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004930861,"about_ca_topic_score_gemma":0.000009085948,"domain_scores_codex":[0.9982238,0.00008878566,0.0003423482,0.0007004337,0.0003698486,0.000274725],"domain_scores_gemma":[0.9988666,0.00004574722,0.0003208505,0.0005988374,0.00001079998,0.0001571579],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001468467,0.00003320653,0.189955,0.00006486115,0.00005904762,0.000005069874,0.00002838983,0.0001189905,0.8096724,0.000005615967,0.00003886423,0.000003913311],"study_design_scores_gemma":[0.0002630145,0.00003777663,0.7958574,0.00002652671,0.0001404632,6.352231e-9,0.000002763045,0.0005393171,0.2025715,0.000007041614,0.0001989012,0.0003552441],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976997,0.0007507197,0.0001052341,0.00001962864,0.0003279184,0.0004585842,0.0005919421,0.00003120855,0.0000150946],"genre_scores_gemma":[0.9956418,0.0004282607,0.00375814,0.00005607203,0.00007437878,0.000005654241,0.000001399069,0.00002961544,0.00000469001],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6071008,"threshold_uncertainty_score":0.9999155,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007520601140362122,"score_gpt":0.1704332401511786,"score_spread":0.1629126390108165,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}