{"id":"W2951342755","doi":"10.1099/mgen.0.000088","title":"Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion","year":2016,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"China Scholarship Council; Suomen Kulttuurirahasto; Academy of Finland; European Food Safety Authority","keywords":"Campylobacter jejuni; Biology; Genome; Lineage (genetic); Genetics; Multilocus sequence typing; Evolutionary biology; Microevolution; Population; Clade; Genotype; Whole genome sequencing; Phylogenetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002698062,0.0001965106,0.0004182265,0.00001000501,0.00006264064,0.00001050036,0.0003817802,0.0001969107,0.0002654024],"category_scores_gemma":[0.00004656376,0.00007264059,0.0001952651,0.0001704132,0.0002837913,0.00006052356,0.0001456651,0.00006000862,0.00002770751],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009262389,"about_ca_system_score_gemma":0.00002821192,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007193537,"about_ca_topic_score_gemma":0.001031488,"domain_scores_codex":[0.9986081,0.000135262,0.0005334362,0.0003375319,0.00007951704,0.0003062263],"domain_scores_gemma":[0.9992216,0.0001273631,0.0003284904,0.0001283358,0.00009575031,0.00009841191],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001382813,0.00008615205,0.04906424,0.000007528014,0.00002876827,0.000001941119,0.00005484692,0.00001460057,0.9452283,0.0004048325,0.0005256698,0.004444777],"study_design_scores_gemma":[0.001138124,0.001331373,0.2261232,0.0000915268,0.0001182891,0.00006176721,0.000191376,0.00005478607,0.7445371,0.0008688475,0.02465045,0.0008331952],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977754,0.0001872079,0.00009274825,0.0006369234,0.0002705516,0.0001648443,0.0007326567,0.00002297152,0.0001167345],"genre_scores_gemma":[0.9985676,0.0001163196,0.0005304006,0.0002728387,0.0002804973,0.00000248869,0.000064268,0.00000216663,0.0001634581],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2006913,"threshold_uncertainty_score":0.2962197,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02105712742544665,"score_gpt":0.2119918518245966,"score_spread":0.1909347243991499,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}