{"id":"W2951342755","doi":"10.1099/mgen.0.000088","title":"Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion","year":2016,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"China Scholarship Council; Suomen Kulttuurirahasto; Academy of Finland; European Food Safety Authority","keywords":"Campylobacter jejuni; Biology; Genome; Lineage (genetic); Genetics; Multilocus sequence typing; Evolutionary biology; Microevolution; Population; Clade; Genotype; Whole genome sequencing; Phylogenetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002352219,0.0001491307,0.0002027871,0.0007013077,0.0002510032,0.0003432383,0.0001280615,0.000298034,0.0009309581],"category_scores_gemma":[0.0005222096,0.0001433629,0.0001406684,0.0007096985,0.0003610068,0.0001919109,0.0003569711,0.0002079586,0.000138094],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001824043,"about_ca_system_score_gemma":0.0001366847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002937793,"about_ca_topic_score_gemma":0.006841976,"domain_scores_codex":[0.9997693,0.0000286455,0.00001736308,0.00009410574,0.00003902392,0.00005160908],"domain_scores_gemma":[0.999539,0.00009826582,0.0001962538,0.00006958726,0.00004435905,0.00005259785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004237387,0.00006453038,0.5993078,0.0000691997,0.00009568356,0.000301537,0.001324695,0.000396268,0.3780241,0.0001695964,0.0001339453,0.01968892],"study_design_scores_gemma":[0.000002249075,0.00007466781,0.9958468,0.000003614908,0.00001394904,0.0003411321,0.0002733231,0.0002547396,0.002892703,0.00004998747,0.0002433426,0.000003593559],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994635,0.00007580752,0.0001891345,0.000007384385,5.254163e-7,0.000002631864,0.00004595964,0.000003892567,0.0002112674],"genre_scores_gemma":[0.9993782,0.00003289187,0.0003484598,0.00001053617,0.000001133428,0.00000247766,0.0001024094,0.000002378234,0.0001214497],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002937793,"threshold_uncertainty_score":0.005841374,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02105712742544665,"score_gpt":0.2119918518245966,"score_spread":0.1909347243991499,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}