{"id":"W2951432822","doi":"10.1021/acssynbio.8b00158","title":"Creation and Characterization of a Genomically Hybrid Strain in the Nitrogen-Fixing Symbiotic Bacterium <i>Sinorhizobium meliloti</i>","year":2018,"lang":"en","type":"article","venue":"ACS Synthetic Biology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Fondazione Umberto Veronesi; Università degli Studi di Firenze; Deutsche Forschungsgemeinschaft","keywords":"Replicon; Sinorhizobium meliloti; Biology; Genome; Strain (injury); Genetics; In silico; Synthetic biology; Gene; Nitrogen fixation; Phenotype; Computational biology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004609128,0.0001488754,0.0002225459,0.00002782064,0.0001062377,0.00003283019,0.0002888106,0.0001195686,0.00009494399],"category_scores_gemma":[0.00009045814,0.00005951402,0.00004652641,0.0002041014,0.0003421083,0.00007372726,0.00007314795,0.000101151,0.00001970804],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001938242,"about_ca_system_score_gemma":0.00001073426,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000119482,"about_ca_topic_score_gemma":0.00008097016,"domain_scores_codex":[0.998677,0.0003160081,0.0003281243,0.0003151306,0.00008347146,0.0002802299],"domain_scores_gemma":[0.9993553,0.0002655472,0.0001643353,0.0001036506,0.00007255583,0.00003868212],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000275015,0.00005542232,0.01353419,0.000005392391,0.00001094846,8.846596e-7,0.0001799043,3.166074e-9,0.9787582,0.0005273984,0.000003667478,0.006896554],"study_design_scores_gemma":[0.0001804022,0.0005799034,0.2295718,0.00003364989,0.00003497054,0.00005379175,0.0001343885,0.00001011808,0.766545,0.002184554,0.000469613,0.0002018072],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974281,0.00004354562,0.000004149526,0.001766942,0.00009788798,0.000249419,0.0001182835,0.00002471339,0.0002670094],"genre_scores_gemma":[0.9991205,0.00001774925,0.00006904923,0.0004435623,0.0001833664,0.00001338669,0.0001426451,0.000002017212,0.000007719406],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2160376,"threshold_uncertainty_score":0.2426911,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01050995466374509,"score_gpt":0.2111957541137534,"score_spread":0.2006857994500083,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}