{"id":"W2951495565","doi":"10.1101/023135","title":"Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens","year":2015,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Forensic and Genetic Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Arnold Arboretum; University of North Carolina at Chapel Hill; Royal Botanical Gardens, Kew; University of Connecticut; Ohio State University","keywords":"Herbarium; Geography; Biology; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003859052,0.0003785649,0.0005702212,0.00006770911,0.00002488798,0.0000368769,0.0004606468,0.0006097348,0.0000243816],"category_scores_gemma":[0.0001345342,0.0003793923,0.0001088503,0.0001230719,0.0002732325,0.000003870997,0.0009355603,0.0003210753,0.000002808686],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003352528,"about_ca_system_score_gemma":0.0003698072,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002873714,"about_ca_topic_score_gemma":0.00003005898,"domain_scores_codex":[0.9977928,0.0001296482,0.0005692407,0.0007419817,0.0004108083,0.0003555326],"domain_scores_gemma":[0.9974614,0.00002677925,0.0004085262,0.001242634,0.0005987763,0.0002619277],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001312286,0.0001028549,0.04220783,0.0002230348,0.0001833813,0.00001655653,0.00001104479,0.00001114664,0.9563544,0.00003689546,0.00072036,0.000001315339],"study_design_scores_gemma":[0.0006063128,0.000272297,0.1450623,0.0001715913,0.00006008912,1.881098e-8,0.000008518694,0.00006256346,0.8507125,0.000003557904,0.002708205,0.0003319939],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939826,0.001890451,0.0008681421,0.00006413652,0.0003315003,0.0003753105,0.002457039,0.0000158914,0.00001492224],"genre_scores_gemma":[0.9966868,0.0005765583,0.002247904,0.0000357934,0.0003290871,0.00001559253,0.00001947554,0.00007053392,0.00001829915],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1056418,"threshold_uncertainty_score":0.9998658,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01749498260336147,"score_gpt":0.2350476543740993,"score_spread":0.2175526717707378,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}