{"id":"W2951648000","doi":"10.1093/molbev/msz098","title":"Transposable Elements Are Important Contributors to Standing Variation in Gene Expression in Capsella Grandiflora","year":2019,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":57,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Biology; Genetics; Expression quantitative trait loci; Single-nucleotide polymorphism; Gene; Genome; Population; Transposable element; Quantitative trait locus; Enhancer; Gene expression; Regulation of gene expression; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002041554,0.0002861559,0.0002500158,0.0007057377,0.0002399784,0.0003138111,0.0002601413,0.0002760739,0.000700391],"category_scores_gemma":[0.0003596733,0.0002179264,0.0002468572,0.0006263434,0.0002443898,0.0001693428,0.0003455407,0.0003368373,0.0001151553],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003682281,"about_ca_system_score_gemma":0.0001865668,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004584425,"about_ca_topic_score_gemma":0.00817138,"domain_scores_codex":[0.9998316,0.00001471651,0.00001150667,0.00008302279,0.00003444369,0.00002470017],"domain_scores_gemma":[0.9997389,0.000077365,0.00008523259,0.00002355677,0.00003853277,0.00003651154],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001509231,0.0000178521,0.03268744,0.00004481752,0.00003961904,0.0001478919,0.0001841058,0.000218387,0.9614452,0.00009360516,0.00003027901,0.004939867],"study_design_scores_gemma":[0.00001420889,0.0001045702,0.9710329,0.000009828083,0.00006361176,0.0004119227,0.0002072629,0.001209224,0.0256685,0.000203332,0.001049564,0.00002505786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988216,0.0002760449,0.0004445673,0.00001840845,0.00000229939,0.000003121818,0.0001913602,0.00001910601,0.0002235265],"genre_scores_gemma":[0.9983034,0.0001098226,0.000545782,0.00002562434,0.000003689295,0.000007687933,0.000552457,0.00000951935,0.0004420016],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004584425,"threshold_uncertainty_score":0.009115517,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005775333734877377,"score_gpt":0.2159982787100479,"score_spread":0.2102229449751706,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}