{"id":"W2951716158","doi":"10.1105/tpc.16.00958","title":"Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network","year":2017,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Insect-Plant Interactions and Control","field":"Agricultural and Biological Sciences","cited_by":284,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Wageningen University and Research; Stichting voor de Technische Wetenschappen; Biotechnology and Biological Sciences Research Council; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Engineering and Physical Sciences Research Council; Directorate for Biological Sciences; University of Warwick; University of Alberta","keywords":"Biology; Jasmonic acid; Gene regulatory network; Transcription factor; Transcriptome; Computational biology; Arabidopsis; Regulation of gene expression; Gene; Transcriptional regulation; Regulator; Genetics; Gene expression; Mutant","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001384093,0.0001020932,0.0001816081,0.000482432,0.0002042699,0.0004673162,0.0002691608,0.0002041284,0.0005795352],"category_scores_gemma":[0.0005150173,0.0001915745,0.0002149322,0.0003656212,0.0002427702,0.0004279375,0.0001915222,0.0002621671,0.0001295033],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005737919,"about_ca_system_score_gemma":0.0004613085,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003419622,"about_ca_topic_score_gemma":0.005316501,"domain_scores_codex":[0.9998809,0.00001775804,0.000004707882,0.00005983916,0.00001835639,0.00001850733],"domain_scores_gemma":[0.9998134,0.0000476303,0.00004735519,0.00001723766,0.00004373779,0.00003067762],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003564383,0.000142535,0.1323256,0.0003421044,0.0001864472,0.0004581715,0.0007277619,0.2735544,0.5032662,0.02779717,0.001930247,0.05891302],"study_design_scores_gemma":[0.00001698356,0.00009142135,0.159209,0.00002237148,0.00007882975,0.0002394377,0.0001977237,0.8052487,0.0145355,0.01481129,0.005509211,0.00003941166],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9667434,0.0006545333,0.02904041,0.0001787962,0.000009030061,0.00002077004,0.0008281576,0.0001718084,0.002353224],"genre_scores_gemma":[0.9907995,0.0003338849,0.007297441,0.0000221554,0.000005865286,0.00003366816,0.0007543155,0.00002066298,0.0007324815],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003419622,"threshold_uncertainty_score":0.0067994,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008171168873392708,"score_gpt":0.1704887919590939,"score_spread":0.1623176230857012,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}