{"id":"W2951922684","doi":"10.1101/673962","title":"Characterization of the virome of shallots affected by the shallot mild yellow stripe disease in France","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Centre National de la Recherche Scientifique; Université de Strasbourg; Institut National de la Santé et de la Recherche Médicale","keywords":"Biology; GenBank; Accession number (library science); Virus; Phylogenetic tree; Inoculation; Human virome; Virology; Botany; Horticulture; Genetics; Genome; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001840934,0.000299284,0.0004043758,0.001234126,0.0005124086,0.0007489667,0.000104929,0.0003604976,0.0005374613],"category_scores_gemma":[0.0001305635,0.00009517274,0.0004076487,0.0005698538,0.0002557676,0.0001503932,0.0001907515,0.0002069662,0.0002340169],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000376337,"about_ca_system_score_gemma":0.0002210196,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006664649,"about_ca_topic_score_gemma":0.007039786,"domain_scores_codex":[0.9998935,0.00001094758,0.000004293306,0.00003572445,0.0000217159,0.00003376905],"domain_scores_gemma":[0.9998684,0.00002407822,0.00002796776,0.000007083122,0.00003189888,0.00004041698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002087886,0.00002234495,0.04325092,0.0000543498,0.00002887449,0.0003382497,0.0006117771,0.0002134014,0.9524355,0.00005477937,0.00004434459,0.002736649],"study_design_scores_gemma":[0.000005684563,0.0002001706,0.9848709,0.00000879063,0.00002646666,0.0004031839,0.0005609524,0.0006011131,0.01092571,0.0000393008,0.002345141,0.00001265083],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986461,0.00019169,0.0003703455,0.000007305193,0.000002668524,0.000009572176,0.0005059258,0.00000758597,0.0002588448],"genre_scores_gemma":[0.9949247,0.0001851241,0.0006322978,0.00002620081,0.000005446007,0.00001195636,0.00327209,0.00001229662,0.0009299745],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006664649,"threshold_uncertainty_score":0.01325172,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01584593429396667,"score_gpt":0.2076587334390892,"score_spread":0.1918127991451226,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}