{"id":"W2952076809","doi":"10.1158/0008-5472.can-17-0344","title":"Software for the Integration of Multiomics Experiments in Bioconductor","year":2017,"lang":"en","type":"article","venue":"Cancer Research","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; Ontario Institute for Cancer Research","funders":"National Cancer Institute; National Human Genome Research Institute; Research Foundation of The City University of New York","keywords":"Bioconductor; Computer science; Software; Visualization; Data integration; Data mining; Data science; Bioinformatics; Computational biology; Biology; Genetics; Operating system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03023224,0.005244219,0.00510642,0.009410403,0.002138803,0.005714622,0.01122636,0.002888072,0.08830215],"category_scores_gemma":[0.04919095,0.004297977,0.004498053,0.01154252,0.00257118,0.005292739,0.007007557,0.008139917,0.07269198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003190085,"about_ca_system_score_gemma":0.01114452,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004904367,"about_ca_topic_score_gemma":0.004669994,"domain_scores_codex":[0.9824386,0.006034556,0.003943451,0.003192295,0.003342257,0.001048872],"domain_scores_gemma":[0.9554131,0.02265679,0.003191921,0.009479341,0.007688828,0.001570014],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0027301,0.0004058979,0.003580848,0.008418392,0.002110893,0.0009614917,0.001253258,0.01006919,0.009437968,0.03168948,0.8233442,0.1059982],"study_design_scores_gemma":[0.001631603,0.0002831747,0.006838988,0.002050736,0.0007284457,0.0009209681,0.0002654416,0.07681148,0.03102668,0.1248213,0.7538983,0.0007228368],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.001832407,0.0007637956,0.3918287,0.0009255723,0.001066097,0.001380694,0.06819969,0.5272579,0.006745148],"genre_scores_gemma":[0.02430476,0.001226983,0.650053,0.002166722,0.0003059295,0.01628749,0.1305219,0.1663341,0.008799138],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.08830215,"threshold_uncertainty_score":0.2954001,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2446144368512364,"score_gpt":0.5000952341773651,"score_spread":0.2554807973261287,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}