{"id":"W2952127018","doi":"10.3201/eid2507.181447","title":"Mitochondrial Junction Region as Genotyping Marker for <i>Cyclospora cayetanensis</i>","year":2019,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Centers for Disease Control and Prevention","keywords":"Cyclospora cayetanensis; Outbreak; Genotyping; Cyclospora; Multilocus sequence typing; Typing; Biology; Sanger sequencing; Virology; Microbiology; Genetics; Genotype; Cryptosporidium; DNA sequencing; Gene; Feces","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00006677846,0.0002277864,0.0002791484,0.0001659413,0.0004046151,0.00003520186,0.00008117043,0.0001935683,0.0009164924],"category_scores_gemma":[0.0003765177,0.0002274104,0.0002362992,0.0001776456,0.00007400069,0.0001527807,0.00003500918,0.0001566494,0.001497233],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009167391,"about_ca_system_score_gemma":0.00009455704,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003308438,"about_ca_topic_score_gemma":0.00002735774,"domain_scores_codex":[0.9987834,0.0000894672,0.0002767986,0.0003954714,0.00004382468,0.0004110058],"domain_scores_gemma":[0.9989795,0.0003559467,0.0001422092,0.0003196934,0.0001556835,0.00004694559],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001230709,0.001078566,0.7785791,0.0002487475,0.001051804,0.00003107731,0.0003830829,0.001974558,0.0632866,0.01021537,0.1318721,0.01004825],"study_design_scores_gemma":[0.01051626,0.001333992,0.1509022,0.0002710485,0.00127919,0.0008181022,0.0004231007,0.0002344898,0.01077073,0.006142289,0.8156608,0.001647798],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9745435,0.001264382,0.004177975,0.0001796646,0.01079587,0.0008691929,0.00003946137,0.0004111579,0.007718778],"genre_scores_gemma":[0.9946356,0.00009261509,0.00003545281,0.000461262,0.0003453796,0.0001258085,0.0002467289,0.00003810827,0.004018987],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6837887,"threshold_uncertainty_score":0.9999968,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00560380170947584,"score_gpt":0.2356158867514269,"score_spread":0.2300120850419511,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}