{"id":"W2952127018","doi":"10.3201/eid2507.181447","title":"Mitochondrial Junction Region as Genotyping Marker for <i>Cyclospora cayetanensis</i>","year":2019,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Centers for Disease Control and Prevention","keywords":"Cyclospora cayetanensis; Outbreak; Genotyping; Cyclospora; Multilocus sequence typing; Typing; Biology; Sanger sequencing; Virology; Microbiology; Genetics; Genotype; Cryptosporidium; DNA sequencing; Gene; Feces","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000573653,0.0002127977,0.0001595012,0.0006395738,0.000236587,0.0003670073,0.0002074125,0.0002357174,0.0005342693],"category_scores_gemma":[0.001180871,0.0001205397,0.0001374862,0.0006386093,0.0001962998,0.0001730829,0.0001390993,0.0002574967,0.000158692],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002072887,"about_ca_system_score_gemma":0.0001752947,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005520949,"about_ca_topic_score_gemma":0.009927533,"domain_scores_codex":[0.9995037,0.0001746665,0.00005565616,0.00009579663,0.0001128138,0.00005733451],"domain_scores_gemma":[0.9993172,0.0001505431,0.0002771186,0.00003935313,0.0001429839,0.00007293151],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002152442,0.00007805202,0.8477213,0.00006291965,0.0000467399,0.0005483098,0.0001864463,0.0002328326,0.1410768,0.00006868447,0.0002396473,0.009523013],"study_design_scores_gemma":[0.00002661652,0.0005687252,0.9483181,0.00004431015,0.0001502035,0.002954975,0.000450315,0.002412612,0.04316678,0.00005506919,0.001838514,0.00001388531],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975169,0.0002548859,0.001185228,0.00004253827,0.0000122534,0.00002375482,0.0002083606,0.0000165995,0.0007395378],"genre_scores_gemma":[0.9957485,0.0001264675,0.003647677,0.00003499618,0.00000531775,0.000006589844,0.0003066506,0.000004437251,0.0001193613],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005520949,"threshold_uncertainty_score":0.01097763,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00560380170947584,"score_gpt":0.2356158867514269,"score_spread":0.2300120850419511,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}