{"id":"W2952358323","doi":"10.1093/gbe/evy201","title":"The Grayling Genome Reveals Selection on Gene Expression Regulation after Whole-Genome Duplication","year":2018,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Norges Forskningsråd; Universitetet i Oslo; National Science Council; Norwegian Sequencing Centre; McGill University","keywords":"Biology; Gene duplication; Genome; Grayling; Gene; Genetics; Selection (genetic algorithm); Computational biology; Gene expression; Regulation of gene expression; Evolutionary biology; Fish <Actinopterygii>; Fishery","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002748615,0.0001579532,0.0001019178,0.00005170412,0.0004371699,0.00002306404,0.00009959599,0.0002405118,0.000009769501],"category_scores_gemma":[0.00003872833,0.0001270539,0.00004547653,0.0001051479,0.00013886,0.000006789563,0.00006542948,0.00008843104,0.00003492765],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004735214,"about_ca_system_score_gemma":0.00002029769,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006443438,"about_ca_topic_score_gemma":0.00001650081,"domain_scores_codex":[0.998954,0.00007806607,0.0002165002,0.0004106871,0.00006224287,0.0002785143],"domain_scores_gemma":[0.9994586,0.000013454,0.00008415755,0.0002776784,0.0001055625,0.0000606018],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000173454,0.00001148525,0.003591701,0.000005809906,0.00001706546,8.602424e-8,0.00004457601,0.0002604413,0.9951304,0.0001602683,0.00002633667,0.0005783284],"study_design_scores_gemma":[0.0003982358,0.0007778261,0.8366553,0.00001149014,0.0000259067,0.00002571362,0.00004264211,0.000366131,0.1199334,0.001696348,0.03975148,0.0003155276],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9172953,0.003069233,0.07884689,0.0001512478,0.0002056296,0.0002393134,0.00002167355,0.00002677519,0.0001439404],"genre_scores_gemma":[0.996995,0.0003167196,0.0007087408,0.00007510629,0.001096342,0.00006847591,0.0003385855,0.0000176067,0.0003834109],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.875197,"threshold_uncertainty_score":0.5181108,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005507323533176581,"score_gpt":0.2596455190179773,"score_spread":0.2541381954848007,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}