{"id":"W2952783023","doi":"10.1128/jvi.00755-19","title":"HIV Diversity and Genetic Compartmentalization in Blood and Testes during Suppressive Antiretroviral Therapy","year":2019,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Université de Montréal; Centre Hospitalier de l’Université de Montréal; Université du Québec à Montréal; Western University; AIDS Vancouver; McGill University Health Centre; Simon Fraser University","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; National Institute of Allergy and Infectious Diseases; African Academy of Sciences; Michael Smith Health Research BC; Canada Research Chairs; National Institutes of Health; Government of Canada; Wellcome Trust; McGill University","keywords":"Biology; Compartmentalization (fire protection); Immune system; Human immunodeficiency virus (HIV); Immunology; Mechanism (biology); Virology; Mutation; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004536473,0.00007137932,0.0002968181,0.000660944,0.0002531653,0.0007307547,0.0001631068,0.0001609152,0.0009416043],"category_scores_gemma":[0.001431737,0.0001090902,0.00008713679,0.0003511589,0.0002735213,0.000399957,0.0002590537,0.0004017002,0.00009893644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001839011,"about_ca_system_score_gemma":0.0001601816,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000585478,"about_ca_topic_score_gemma":0.0006801731,"domain_scores_codex":[0.9996613,0.0001143001,0.00001991041,0.00004948615,0.00007474702,0.0000803022],"domain_scores_gemma":[0.9991468,0.0002662775,0.0002452226,0.00006506788,0.00009344796,0.0001831106],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003936531,0.0002345049,0.3322652,0.00007715001,0.00008566319,0.0009252666,0.001276867,0.0006271394,0.626039,0.0006810416,0.0001569241,0.03369461],"study_design_scores_gemma":[0.00005055794,0.002474445,0.8741724,0.00003834058,0.0001019518,0.003551664,0.001417196,0.004048517,0.1114673,0.0008162208,0.001825527,0.00003592827],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990319,0.0003727534,0.0002429258,0.00001220926,0.000001702148,0.000004274415,0.00004168891,0.000004723339,0.0002878324],"genre_scores_gemma":[0.9996245,0.00008005953,0.0001070721,0.000009100228,0.000004021864,0.00000245016,0.00005108162,0.000002632542,0.0001189911],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009416043,"threshold_uncertainty_score":0.003149986,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009330904108542933,"score_gpt":0.2294632600404272,"score_spread":0.2201323559318843,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}