{"id":"W2952949211","doi":"10.1038/ng.3980","title":"Ancient hybridization and strong adaptation to viruses across African vervet monkey populations","year":2017,"lang":"en","type":"article","venue":"Nature Genetics","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":137,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"National Center for Research Resources; National Institute of Neurological Disorders and Stroke; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Biology; Vervet monkey; Evolutionary biology; Simian immunodeficiency virus; Genome; Adaptation (eye); Simian; Taxon; Reticulate; Natural selection; Phenotype; Genetics; Selection (genetic algorithm); Gene; Virus; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008354743,0.0002446934,0.0003494529,0.0009024324,0.001551186,0.001281299,0.0004382312,0.0008829795,0.003046704],"category_scores_gemma":[0.001496441,0.0002524102,0.000200858,0.0007711448,0.00154928,0.0007071492,0.001389413,0.001022974,0.0002913987],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006321574,"about_ca_system_score_gemma":0.0002784156,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001825072,"about_ca_topic_score_gemma":0.003596404,"domain_scores_codex":[0.9993227,0.0002440841,0.00002789708,0.0001834991,0.00008289329,0.000138943],"domain_scores_gemma":[0.9995665,0.0001292643,0.00009641398,0.00008823489,0.0000574059,0.00006220201],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002255268,0.0002095088,0.2120605,0.000220588,0.0003391178,0.002848552,0.01406719,0.0004609394,0.6831192,0.008252986,0.0002955715,0.07587064],"study_design_scores_gemma":[0.00006108579,0.0006978814,0.9447396,0.0001740039,0.0001836734,0.008003251,0.008275524,0.001281448,0.02010369,0.005636938,0.01078592,0.00005697287],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974303,0.0004107846,0.0003928114,0.0001133984,0.00001046581,0.000005060718,0.00002083772,0.000007376978,0.001609028],"genre_scores_gemma":[0.9987041,0.000281726,0.000271906,0.00008446517,0.00001429734,0.000006220008,0.00003357003,0.000008658501,0.0005950836],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003046704,"threshold_uncertainty_score":0.01019222,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05182193313474433,"score_gpt":0.3566667219332645,"score_spread":0.3048447887985202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}