{"id":"W2953094151","doi":"10.1101/026021","title":"Evolutionary quantitative genomics of <i>Populus trichocarpa</i>","year":2015,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Reproductive Biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria; University of British Columbia","funders":"Genome British Columbia; Genome Canada","keywords":"Populus trichocarpa; Genomics; Biology; Computational biology; Evolutionary biology; Genome; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007151907,0.0005223835,0.0006548784,0.0001915974,0.00006702948,0.00002362482,0.0006866475,0.0008542904,0.000006413259],"category_scores_gemma":[0.0007625198,0.000563473,0.0002059278,0.0002466665,0.0003224551,0.000007860883,0.0009314762,0.0004520259,0.00003112801],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002118845,"about_ca_system_score_gemma":0.001507263,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005538334,"about_ca_topic_score_gemma":0.000003451817,"domain_scores_codex":[0.9970828,0.0002686294,0.0006057319,0.001316332,0.0002585235,0.0004680122],"domain_scores_gemma":[0.9964718,0.00002875087,0.0006537585,0.001494479,0.001136928,0.0002142414],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002556773,0.0001479728,0.005559249,0.0001253784,0.0003006568,0.00001388731,0.000005306187,0.0002092806,0.9885647,0.0004073339,0.004409541,9.927629e-7],"study_design_scores_gemma":[0.000770918,0.0004575079,0.03241104,0.00009200765,0.0001554157,1.602735e-7,0.000008147884,0.0001321088,0.9235347,0.00001707148,0.04144278,0.0009781595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9839371,0.01123155,0.001276117,0.00008637946,0.001344291,0.000625562,0.001389229,0.00006659624,0.00004317582],"genre_scores_gemma":[0.985066,0.0008194562,0.01309937,0.00009392236,0.0006931646,0.0001001413,0.00001299938,0.00009929287,0.00001567649],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06503003,"threshold_uncertainty_score":0.9996817,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01939924688180908,"score_gpt":0.2391100408236951,"score_spread":0.219710793941886,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}