{"id":"W2953324593","doi":"10.1093/sysbio/syx058","title":"Conserved Nonexonic Elements: A Novel Class of Marker for Phylogenomics","year":2017,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"","keywords":"Biology; Phylogenetic tree; Phylogenomics; Evolutionary biology; Coalescent theory; Clade; Phylogenetics; Indel; Supermatrix; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000903678,0.0004577028,0.0006107634,0.001737723,0.000476721,0.001059608,0.0006531927,0.0005728381,0.001127623],"category_scores_gemma":[0.002483129,0.0002264294,0.0002912295,0.001794518,0.0003427313,0.001048147,0.0008074259,0.001061931,0.0005114819],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002300428,"about_ca_system_score_gemma":0.0002517843,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004042531,"about_ca_topic_score_gemma":0.001089025,"domain_scores_codex":[0.9992668,0.0001561396,0.00005400323,0.0003421338,0.0001384684,0.00004259583],"domain_scores_gemma":[0.9981632,0.0007690062,0.0005804478,0.0002302815,0.0001476631,0.0001094573],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.001071814,0.0001867725,0.1618849,0.0006354919,0.0005145463,0.0004821505,0.0008030231,0.004830086,0.602711,0.008025851,0.001262064,0.2175923],"study_design_scores_gemma":[0.0001787847,0.0008578919,0.4655477,0.0003590972,0.0007243393,0.004711472,0.0007491341,0.1336556,0.28673,0.01951208,0.08665542,0.00031855],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.7197308,0.003215181,0.2663281,0.000150537,0.00009667833,0.0001270633,0.005327976,0.001061091,0.003962595],"genre_scores_gemma":[0.7101315,0.0008011845,0.2778436,0.0001414562,0.00009803365,0.0001768585,0.008575947,0.0002711069,0.001960286],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001737723,"threshold_uncertainty_score":0.00477916,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03237466006196306,"score_gpt":0.2866234409762973,"score_spread":0.2542487809143342,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}