{"id":"W2953493704","doi":"10.1074/mcp.ra119.001623","title":"Associations of the Fecal Microbial Proteome Composition and Proneness to Diet-induced Obesity","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Crohn's and Colitis Foundation","keywords":"Obesity; Gut flora; Feces; Biology; Microbiome; Cohort; Composition (language); Physiology; Proteome; Endocrinology; Internal medicine; Immunology; Medicine; Genetics; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002479692,0.0001772718,0.0002228639,0.00003868641,0.0001280227,0.00002884907,0.00023269,0.0002184265,0.000004590231],"category_scores_gemma":[0.00002573503,0.0001572628,0.0001137993,0.0001345987,0.00004522873,0.000004718891,0.0002625802,0.000160826,0.00001319373],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004697731,"about_ca_system_score_gemma":0.0001436257,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006907839,"about_ca_topic_score_gemma":0.00002161856,"domain_scores_codex":[0.9987876,0.000151884,0.0002668506,0.0003780781,0.0001400947,0.0002755016],"domain_scores_gemma":[0.9991759,0.000004011697,0.0001605448,0.0004548452,0.0001182588,0.00008645657],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007320993,0.0001037063,0.005412397,0.00007063696,0.00003264953,0.000001007146,0.00007536443,0.00004408391,0.9939595,0.0001538464,0.00003221318,0.00004136701],"study_design_scores_gemma":[0.0005138395,0.000300284,0.02218474,0.00003357933,0.0000229375,0.000005879981,0.00001085499,0.00002422893,0.9764179,0.00003962877,0.0002609407,0.0001852011],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946605,0.00006988648,0.002005745,0.0004178856,0.000145708,0.002542461,0.00006245503,0.000009383137,0.00008598133],"genre_scores_gemma":[0.9967294,0.000004314608,0.002570848,0.0003466895,0.00005119211,0.00004709273,0.0001193564,0.00002999213,0.0001010981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01754163,"threshold_uncertainty_score":0.6412991,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007846083174227891,"score_gpt":0.2272307013222737,"score_spread":0.2193846181480458,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}