{"id":"W2953928752","doi":"10.1101/690891","title":"Metagenomic analysis of virus diversity and relative abundance in a eutrophic freshwater harbour","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; York University","keywords":"Biology; Ecology; Metagenomics; Abundance (ecology); Virus classification; Giant Virus; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002796865,0.0004471021,0.0005303207,0.001577199,0.0005271386,0.0007392672,0.0002249549,0.000369052,0.0005385936],"category_scores_gemma":[0.000291561,0.0002016446,0.0005294371,0.001296338,0.0002175832,0.000326787,0.0006484502,0.0003088094,0.0001858407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000410882,"about_ca_system_score_gemma":0.0003117759,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005055732,"about_ca_topic_score_gemma":0.007288446,"domain_scores_codex":[0.999738,0.00002193591,0.00001141922,0.0001232237,0.00006537398,0.00003995088],"domain_scores_gemma":[0.9998517,0.00002393436,0.00003694533,0.000009701966,0.00005125722,0.00002642464],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003037923,0.00005991194,0.1717738,0.0001484339,0.0001560031,0.0001561032,0.0006224461,0.0008916703,0.8145981,0.000117525,0.0001365175,0.01103572],"study_design_scores_gemma":[0.000007856809,0.0002823005,0.950149,0.00002892875,0.0001330776,0.0002185921,0.0009595737,0.005670634,0.03941671,0.0001510849,0.002945358,0.00003678343],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959291,0.0002506591,0.001128801,0.00001711315,0.00000540172,0.00001461781,0.002242454,0.00002680302,0.000385198],"genre_scores_gemma":[0.9906982,0.0002175317,0.003717269,0.00005048359,0.000008233316,0.00004285202,0.004067238,0.00002415037,0.001174019],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005055732,"threshold_uncertainty_score":0.01005262,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01246072129260672,"score_gpt":0.2067597640467146,"score_spread":0.1942990427541079,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}