{"id":"W2954232647","doi":"10.1074/mcp.ra119.001612","title":"Multi-omics Biomarker Pipeline Reveals Elevated Levels of Protein-glutamine Gamma-glutamyltransferase 4 in Seminal Plasma of Prostate Cancer Patients","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Calgary; University of Toronto; University Health Network; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research; Prostate Cancer Canada; Government of Canada","keywords":"Prostate cancer; Biomarker; Prostate; Biomarker discovery; Proteomics; Cancer; PCA3; Cancer biomarkers; Medicine; Oncology; Cancer research; Internal medicine; Biology; Biochemistry; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005033363,0.0004148204,0.0008834976,0.0004164269,0.00003093595,0.00001413292,0.0002322293,0.0002580045,0.0001386865],"category_scores_gemma":[0.00009946304,0.0003620074,0.0002180831,0.0006960806,0.0001865282,0.0001017072,0.00009836136,0.0003962703,0.00001651728],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002846196,"about_ca_system_score_gemma":0.0004574121,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002005434,"about_ca_topic_score_gemma":0.00001302873,"domain_scores_codex":[0.9968789,0.0001655814,0.00103086,0.0006055312,0.0006758297,0.0006432894],"domain_scores_gemma":[0.9983097,0.00002810788,0.0003263023,0.0005855396,0.0005492844,0.0002010688],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002630825,0.001134233,0.08979853,0.001587973,0.0001695423,0.0001434371,0.0003685269,0.0001032766,0.9019291,0.00001109511,0.000006655477,0.002116825],"study_design_scores_gemma":[0.01362485,0.0006703286,0.01597006,0.001059786,0.0001015473,0.000005756653,0.00004923934,0.006038912,0.9620795,0.00002953178,0.00005405466,0.0003164791],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9897831,0.0008958014,0.0008165356,0.0001815055,0.00007850534,0.007582131,0.0005740182,0.00002824598,0.00006014548],"genre_scores_gemma":[0.9913534,0.000166837,0.005946352,0.00003692965,0.00001522633,0.0003549069,0.0003488956,0.0001033889,0.001674096],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07382847,"threshold_uncertainty_score":0.9998832,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01792547505564822,"score_gpt":0.2764582476630557,"score_spread":0.2585327726074075,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}