{"id":"W2954580882","doi":"10.1099/ijsem.0.003569","title":"Description and complete genome sequence of Bradyrhizobium amphicarpaeae sp. nov., harbouring photosystem and nitrogen-fixation genes","year":2019,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Bradyrhizobium; rpoB; Phylogenetic tree; Genome; Genetics; Lineage (genetic); Whole genome sequencing; Gene; Sequence analysis; Botany; 16S ribosomal RNA; Rhizobium","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004577701,0.0001357105,0.0004189437,0.00007622811,0.00006244425,0.00003875059,0.000207945,0.0001023208,0.00003606913],"category_scores_gemma":[0.00004900585,0.00006674243,0.00007543999,0.00007513221,0.0001159173,0.0002367407,0.00009362585,0.00009406126,0.000006950088],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000715037,"about_ca_system_score_gemma":0.0000172985,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006601145,"about_ca_topic_score_gemma":0.00001241355,"domain_scores_codex":[0.9986329,0.0001761849,0.0007200039,0.0001849276,0.0001494987,0.0001364824],"domain_scores_gemma":[0.9985428,0.0002105647,0.0007521184,0.00004422728,0.0003899657,0.00006025505],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004924752,0.00002586293,0.03364313,0.0006742062,0.0001401575,0.000004430791,0.0001022361,0.000001180597,0.9650521,0.0002672611,0.00000906309,0.00003112536],"study_design_scores_gemma":[0.007415405,0.004576427,0.7971189,0.02653537,0.001078422,0.0717538,0.008088531,0.002507089,0.06768956,0.008950979,0.001730575,0.002554959],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950727,0.003695908,0.00001897876,0.0003244905,0.0004062176,0.0002752159,0.0001824506,0.000008255261,0.00001575913],"genre_scores_gemma":[0.999214,0.0001228197,0.000385945,0.00005406075,0.0001400098,0.00000431825,0.0000484616,0.000001830433,0.00002855705],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8973625,"threshold_uncertainty_score":0.2721677,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02323422640114223,"score_gpt":0.2111700867329286,"score_spread":0.1879358603317863,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}