{"id":"W2954580882","doi":"10.1099/ijsem.0.003569","title":"Description and complete genome sequence of Bradyrhizobium amphicarpaeae sp. nov., harbouring photosystem and nitrogen-fixation genes","year":2019,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Bradyrhizobium; rpoB; Phylogenetic tree; Genome; Genetics; Lineage (genetic); Whole genome sequencing; Gene; Sequence analysis; Botany; 16S ribosomal RNA; Rhizobium","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003711221,0.001197395,0.001185225,0.00153676,0.0006347374,0.0008362158,0.000632164,0.0006428999,0.001853146],"category_scores_gemma":[0.0006413959,0.0004011457,0.000693127,0.003319251,0.000284439,0.0004233854,0.000429795,0.0009531775,0.003172622],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006310134,"about_ca_system_score_gemma":0.001930923,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01436492,"about_ca_topic_score_gemma":0.009212437,"domain_scores_codex":[0.9997191,0.00001882667,0.00003925161,0.00007809481,0.0001023879,0.00004243707],"domain_scores_gemma":[0.9994018,0.00008571927,0.0001234728,0.00005050232,0.0001921436,0.0001463534],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001443338,0.0001832851,0.006610598,0.002629178,0.00007356552,0.001187005,0.0005226648,0.001039876,0.9391999,0.0003184503,0.00356255,0.04322975],"study_design_scores_gemma":[0.0006741277,0.001183445,0.4961422,0.001104461,0.001140386,0.006690001,0.0009908961,0.00574044,0.115232,0.0008752503,0.3699318,0.0002949757],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5572791,0.01680546,0.01910152,0.001006024,0.0004651941,0.001112193,0.3928332,0.0009341994,0.01046326],"genre_scores_gemma":[0.2096695,0.007926508,0.03380644,0.0002837222,0.0001319541,0.0006024208,0.7410137,0.0002956005,0.006270192],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01436492,"threshold_uncertainty_score":0.02856261,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02323422640114223,"score_gpt":0.2111700867329286,"score_spread":0.1879358603317863,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}