{"id":"W2954898194","doi":"10.1093/ibd/izz130","title":"Treatment-Specific Composition of the Gut Microbiota Is Associated With Disease Remission in a Pediatric Crohn’s Disease Cohort","year":2019,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; University of Illinois at Urbana-Champaign; National Science Foundation; National Institutes of Health; Leona M. and Harry B. Helmsley Charitable Trust","keywords":"Crohn's disease; Medicine; Disease; Cohort; Gut flora; Cohort study; Immunology; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005709539,0.0002561883,0.000219831,0.00007780861,0.00009910551,0.00002462604,0.0002201461,0.00009853188,0.00007193849],"category_scores_gemma":[0.00002352819,0.0001824105,0.0001822867,0.0001536278,0.00009957704,0.00001179782,0.00008388735,0.00007690551,0.00001935948],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001199301,"about_ca_system_score_gemma":0.000523738,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001135676,"about_ca_topic_score_gemma":0.00001569173,"domain_scores_codex":[0.9985735,0.0001423627,0.0003306916,0.0004705167,0.0001782023,0.0003047602],"domain_scores_gemma":[0.9987151,0.00001994537,0.000227237,0.0006526295,0.00009196908,0.0002931426],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001040038,0.0004305268,0.9028483,0.0001335753,0.00004107786,0.00005352018,0.00003896846,0.00006994318,0.09394722,0.00001140059,0.001343522,0.00004190088],"study_design_scores_gemma":[0.001585537,0.00008017212,0.9954505,0.0001356304,0.0001307537,0.000001781065,0.00001431458,0.00002341252,0.001166848,0.00001156835,0.001168682,0.000230791],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962367,0.001848492,0.000002064532,0.0001637598,0.0001146967,0.0009321421,0.0006036255,0.00001823975,0.00008028526],"genre_scores_gemma":[0.9979691,0.000687847,0.000007214246,0.0001755042,0.00008940131,0.00004196779,0.0004878943,0.00003361078,0.000507487],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09278037,"threshold_uncertainty_score":0.7438484,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005569220954564449,"score_gpt":0.218345669085213,"score_spread":0.2127764481306486,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}