{"id":"W2955662574","doi":"10.1109/iemcon.2019.8936300","title":"Development and Application of a Software Tool/Package for Pan-Genomic Analysis","year":2019,"lang":"en","type":"article","venue":"","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Thompson Rivers University","funders":"","keywords":"Genome; Biology; Gene; Comparative genomics; Gene Annotation; Genomics; Computational biology; Organism; Pipeline (software); Computer science; Genetics; Programming language","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005173218,0.003286544,0.002294786,0.003494291,0.00134876,0.002152005,0.003867752,0.001190928,0.03302156],"category_scores_gemma":[0.01006855,0.002330804,0.003760857,0.002860871,0.0009111636,0.003202993,0.004064668,0.004615372,0.01944848],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009728261,"about_ca_system_score_gemma":0.003151644,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00375137,"about_ca_topic_score_gemma":0.003335293,"domain_scores_codex":[0.9977123,0.0004368273,0.0003500144,0.0005507772,0.0007069264,0.0002431884],"domain_scores_gemma":[0.9955715,0.002097415,0.000412017,0.0007191832,0.000950486,0.0002492802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001939536,0.0005402869,0.007410004,0.003482962,0.001898117,0.001288764,0.001346564,0.02141958,0.05472347,0.01968252,0.3070264,0.5792419],"study_design_scores_gemma":[0.001176055,0.0007281792,0.01248466,0.0007494031,0.0007885845,0.001947238,0.0003168211,0.2180499,0.1159612,0.05205345,0.5949357,0.0008089098],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.001951921,0.0001519763,0.6933303,0.0001604161,0.0001862252,0.0004289672,0.0080332,0.2936099,0.002146999],"genre_scores_gemma":[0.01754099,0.0003495906,0.8732476,0.0003688917,0.00008518009,0.002390788,0.02854813,0.07273266,0.004736162],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.03302156,"threshold_uncertainty_score":0.1104681,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006914880519561526,"score_gpt":0.222588990771711,"score_spread":0.2156741102521494,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}