{"id":"W2955994043","doi":"10.1128/jcm.00377-19","title":"Serotype and Genotype (Multilocus Sequence Type) of Streptococcus suis Isolates from the United States Serve as Predictors of Pathotype","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"U.S. Department of Agriculture","keywords":"Multilocus sequence typing; Serotype; Biology; Streptococcus suis; Microbiology; Genotype; Typing; Virology; Virulence; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004436551,0.0001374808,0.0007223529,0.00008156827,0.00002359312,0.000004825755,0.0001239951,0.0002277148,0.000393945],"category_scores_gemma":[0.0006669016,0.00007672323,0.0001906011,0.0002093449,0.0002885503,0.00004084226,0.00006125383,0.0003840116,0.00002620008],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001811038,"about_ca_system_score_gemma":0.0001797859,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006614836,"about_ca_topic_score_gemma":0.00003106822,"domain_scores_codex":[0.9982847,0.000232765,0.001113234,0.0001694341,0.00005311281,0.0001467307],"domain_scores_gemma":[0.9965625,0.001555415,0.0008878534,0.0002540703,0.0006372647,0.0001029166],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001162045,0.0002774552,0.931032,0.00002348743,0.0006839032,0.00001122097,0.0001126497,0.00002540116,0.06562833,0.00001646289,0.0002110657,0.0008159697],"study_design_scores_gemma":[0.004460229,0.009442672,0.9632539,0.0003379963,0.0005691611,0.0001652023,0.0002100193,0.0000846383,0.01407778,0.0004537397,0.006827552,0.0001171776],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979887,0.0006330948,0.000006524892,0.0003049597,0.0005750851,0.0003350811,0.000101656,0.000006112821,0.00004880422],"genre_scores_gemma":[0.9983163,0.0008882805,0.0002882127,0.0002064337,0.0001269302,0.000001126187,0.00006410396,0.0000120024,0.00009655107],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05155056,"threshold_uncertainty_score":0.4313422,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06022193741050352,"score_gpt":0.383718591155233,"score_spread":0.3234966537447295,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}