{"id":"W2955994043","doi":"10.1128/jcm.00377-19","title":"Serotype and Genotype (Multilocus Sequence Type) of Streptococcus suis Isolates from the United States Serve as Predictors of Pathotype","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"U.S. Department of Agriculture","keywords":"Multilocus sequence typing; Serotype; Biology; Streptococcus suis; Microbiology; Genotype; Typing; Virology; Virulence; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000396386,0.0003170285,0.0002142942,0.0009827951,0.0001808849,0.0003692887,0.00008960275,0.0002538989,0.001505749],"category_scores_gemma":[0.001561104,0.000128443,0.0002329632,0.000811852,0.0001234302,0.000191836,0.0002274522,0.0002369832,0.0003423522],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001265867,"about_ca_system_score_gemma":0.0001777311,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004491957,"about_ca_topic_score_gemma":0.01165898,"domain_scores_codex":[0.9996449,0.0001136705,0.00005041637,0.00004527167,0.0000921044,0.00005368095],"domain_scores_gemma":[0.9990298,0.0002006167,0.0004452876,0.00005186398,0.0001653417,0.0001072281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009429429,0.00003326871,0.9937774,0.0000117756,0.00003220838,0.00002828642,0.00002619047,0.00006584039,0.001024022,0.00001236773,0.0002975104,0.004596935],"study_design_scores_gemma":[0.000002807719,0.0001171061,0.9983556,0.00001272058,0.00002357574,0.0001975315,0.0001136865,0.0002155015,0.0006233396,0.00001857479,0.0003173187,0.000002355258],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958162,0.0004716864,0.0003439271,0.00007453667,0.00001920374,0.00001158113,0.002106433,0.00001165913,0.001144828],"genre_scores_gemma":[0.997052,0.0002430532,0.0006500342,0.00004973252,0.00001022301,0.000007054056,0.001691428,0.000003310934,0.0002930518],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004491957,"threshold_uncertainty_score":0.008931637,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06022193741050352,"score_gpt":0.383718591155233,"score_spread":0.3234966537447295,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}