{"id":"W2960517981","doi":"10.3389/fpls.2019.00864","title":"Targeted Capture of Hundreds of Nuclear Genes Unravels Phylogenetic Relationships of the Diverse Neotropical Palm Tribe Geonomateae","year":2019,"lang":"en","type":"article","venue":"Frontiers in Plant Science","topic":"Oil Palm Production and Sustainability","field":"Environmental Science","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland; University of British Columbia","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Tribe; Phylogenetic tree; Biology; Palm; Clade; Evolutionary biology; Phylogenetics; Nuclear gene; Gene; Genetics; Genome; Anthropology; Sociology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005887199,0.00008144051,0.0001889598,0.00008318735,0.00009549005,0.000005253786,0.0005507452,0.00005980313,0.0001576664],"category_scores_gemma":[0.0001735091,0.00006114132,0.00005016458,0.0007742282,0.00144845,0.0001307483,0.0002011354,0.0001328854,0.000007189143],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001289137,"about_ca_system_score_gemma":0.00006118033,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002526463,"about_ca_topic_score_gemma":0.00002537431,"domain_scores_codex":[0.9986641,0.000118434,0.0002963708,0.0002926566,0.0004223617,0.0002061036],"domain_scores_gemma":[0.9993129,0.00002741281,0.0001768537,0.0004073775,0.00002603884,0.00004937698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002841854,0.00005004742,0.9710145,0.00002244219,0.000002519521,4.196832e-7,0.0010717,0.004616484,0.02195468,0.0001900372,0.000341881,0.0007068477],"study_design_scores_gemma":[0.0001958966,0.00003655926,0.9848698,0.00001123863,0.000006060455,0.000002252894,0.002325986,0.003070551,0.008120197,0.0005943234,0.0006942081,0.00007297124],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981053,0.00005736089,0.0001088167,0.0001126242,0.0004910388,0.0002556593,0.00003543765,0.000005566033,0.0008282301],"genre_scores_gemma":[0.9975165,0.00001065705,0.002262887,0.00001512155,0.000004581651,0.000001400076,0.000001500523,0.000003466297,0.0001839427],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01385523,"threshold_uncertainty_score":0.5336875,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007488138880755739,"score_gpt":0.1878154379499817,"score_spread":0.180327299069226,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}