{"id":"W2960613601","doi":"10.1101/702647","title":"Resolution and co-occurrence patterns of <i>Gardnerella leopoldii</i> , <i>Gardnerella swidsinskii</i> , <i>Gardnerella piotii</i> and <i>Gardnerella vaginalis</i> within the vaginal microbiome","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"B.C. Women's Hospital & Health Centre; Women's Health Research Institute; University of Saskatchewan","funders":"","keywords":"Gardnerella vaginalis; Biology; Microbiome; Microbiology; Bacterial vaginosis; Zoology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002636158,0.0001912895,0.0002203842,0.001077811,0.000526376,0.0005551798,0.0002644591,0.000277207,0.001235704],"category_scores_gemma":[0.001135323,0.0001358436,0.0002305793,0.00111622,0.0003124877,0.0001548286,0.0005399464,0.0002057938,0.0002027152],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000838479,"about_ca_system_score_gemma":0.001096568,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.2276487,"about_ca_topic_score_gemma":0.2935401,"domain_scores_codex":[0.9996238,0.00002753706,0.00002586887,0.0001034697,0.0001295552,0.00008985349],"domain_scores_gemma":[0.9995317,0.00006038819,0.0001197311,0.00001895355,0.0001890936,0.0000801229],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002482444,0.00002375025,0.9431162,0.0001386234,0.00006477276,0.0002459291,0.0009243504,0.0001007274,0.03924966,0.00005000203,0.0003794843,0.01545829],"study_design_scores_gemma":[0.000002502562,0.00006106897,0.9931399,0.0000267608,0.00003360708,0.0003502058,0.001468888,0.0002987818,0.003585759,0.00002409436,0.001000044,0.000008446672],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978321,0.00044463,0.0002246709,0.00004745249,0.0000057783,0.00001305716,0.0007628451,0.00000821287,0.0006611155],"genre_scores_gemma":[0.9980185,0.0002756613,0.0005562291,0.00003076745,0.000003547834,0.000006147343,0.0006538162,0.000003382179,0.0004518371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2276487,"threshold_uncertainty_score":0.4526473,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01480481955954087,"score_gpt":0.2457785262297748,"score_spread":0.230973706670234,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}