{"id":"W2960683969","doi":"10.3389/fmicb.2019.01706","title":"A Novel Animal Model for Regional Microbial Dysbiosis of the Pioneer Microbial Community","year":2019,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; International Centre for Infectious Diseases","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Ministry of Agriculture - Saskatchewan","keywords":"Dysbiosis; Microbial population biology; Biology; Microbial ecology; Ecology; Metagenomics; Microbiome; Microbiology; Computational biology; Bacteria; Bioinformatics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006673854,0.0008457139,0.0008148297,0.001505172,0.0006929226,0.0009153298,0.001075682,0.001302111,0.002705839],"category_scores_gemma":[0.000448525,0.0004692055,0.0006236852,0.0003484293,0.00113761,0.0009048958,0.0007801682,0.002351526,0.0008716816],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008483693,"about_ca_system_score_gemma":0.0008411226,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001246284,"about_ca_topic_score_gemma":0.002881422,"domain_scores_codex":[0.9994499,0.00006623824,0.00005579884,0.000203125,0.0001206429,0.0001042624],"domain_scores_gemma":[0.9990116,0.0001235878,0.0002529605,0.000165642,0.0001067618,0.000339483],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008935567,0.0006788858,0.0009395793,0.0001433698,0.00001999569,0.0004199418,0.0001142946,0.0001168708,0.992485,0.0007334106,0.0002296332,0.003225568],"study_design_scores_gemma":[0.000491172,0.02428565,0.02247073,0.0003355375,0.0003704251,0.004649955,0.001009864,0.004142081,0.9071974,0.001704565,0.03321627,0.0001263474],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9705566,0.002190574,0.02152043,0.0007076605,0.0003435909,0.0005098925,0.001347397,0.0004552776,0.002368492],"genre_scores_gemma":[0.9089161,0.004142248,0.05542668,0.0007189256,0.0001343507,0.002040929,0.003244176,0.0002676461,0.025109],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002705839,"threshold_uncertainty_score":0.009051919,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01614136371750404,"score_gpt":0.2418357797983583,"score_spread":0.2256944160808542,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}