{"id":"W2961094452","doi":"10.1186/s12863-019-0761-9","title":"Genome-wide association analysis for β-hydroxybutyrate concentration in Milk in Holstein dairy cattle","year":2019,"lang":"en","type":"article","venue":"BMC Genetics","topic":"Reproductive Physiology in Livestock","field":"Agricultural and Biological Sciences","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Milk; Ontario Ministry of Research, Innovation and Science; Ontario Ministry of Agriculture, Food and Rural Affairs; Agricultural Research Service; Genome Canada; Ontario Genomics; Aarhus Universitet","keywords":"Ketosis; Dairy cattle; Lactation; Genome-wide association study; Animal science; Holstein Cattle; Single-nucleotide polymorphism; Biology; Endocrinology; Pregnancy; Genetics; Genotype; Gene; Diabetes mellitus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003048597,0.00008936786,0.0001954751,0.00002329056,0.00002894145,0.00001887857,0.0001331733,0.0001032524,0.00004554906],"category_scores_gemma":[0.0001589354,0.00004621161,0.00007537709,0.0005059721,0.00001645597,0.00005373254,0.00002729607,0.0000662789,0.00003427685],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001234956,"about_ca_system_score_gemma":0.00001363232,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008340474,"about_ca_topic_score_gemma":0.001277238,"domain_scores_codex":[0.9989771,0.0001184794,0.0002307188,0.0003397577,0.0001055314,0.0002284676],"domain_scores_gemma":[0.9993304,0.0003643665,0.0001324962,0.00008149289,0.00006495153,0.00002630613],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001341944,0.00003295931,0.7453954,0.000003379585,0.00001588227,5.930739e-8,0.00006538013,0.007381036,0.2469766,0.00001183105,0.0000112165,0.00009292934],"study_design_scores_gemma":[0.000193848,0.0001814214,0.9917513,0.000002484068,0.00002315171,4.923598e-8,0.0000904985,0.001273155,0.005301435,0.0007009041,0.0003733638,0.0001084664],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986976,0.00017944,0.00003467378,0.0002878793,0.0001042317,0.0005319461,0.00003175929,0.00001052206,0.0001219814],"genre_scores_gemma":[0.9987118,0.00002827044,0.0004488248,0.00008024546,0.000105014,0.00004431391,0.0002112737,9.416723e-7,0.0003692642],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2463559,"threshold_uncertainty_score":0.1884455,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02333892520172157,"score_gpt":0.2383429959366581,"score_spread":0.2150040707349365,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}