{"id":"W2961505274","doi":"10.1016/j.anaerobe.2019.102073","title":"Expanding the repertoire of conservative site-specific recombination in Clostridioides difficile","year":2019,"lang":"en","type":"article","venue":"Anaerobe","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; Tufts University School of Medicine; Tufts University","keywords":"Biology; Genetics; Clostridioides; Phase variation; Population; Chromosomal inversion; Recombination; Genetic variation; Evolutionary biology; Computational biology; Gene; Phenotype; Microbiology; Chromosome","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005003287,0.0001631307,0.0003969274,0.0002024419,0.00006940373,0.0000210078,0.0001580606,0.0001107449,0.0005177089],"category_scores_gemma":[0.0002544743,0.0001174044,0.000130987,0.0006927756,0.0001243066,0.00007093868,0.00008091049,0.0003655084,0.0001438233],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002036288,"about_ca_system_score_gemma":0.0001250237,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004271984,"about_ca_topic_score_gemma":0.0000803134,"domain_scores_codex":[0.9982892,0.0001104241,0.0004843006,0.0003356802,0.0004505944,0.0003298585],"domain_scores_gemma":[0.9986141,0.0004599426,0.0001348691,0.0005266447,0.0001940813,0.00007032834],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008409008,0.0006608178,0.1725642,0.0002037252,0.0000722593,0.0000679861,0.002121184,0.00005989682,0.803968,0.001892242,0.007937205,0.00961167],"study_design_scores_gemma":[0.004107303,0.001015268,0.08147815,0.000602463,0.00003606217,0.00003253812,0.004069536,0.0004953814,0.897294,0.0001513456,0.01041869,0.0002992106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9892243,0.0008987121,0.000005347464,0.002202249,0.0001371207,0.0007107836,0.00001238715,0.00002851713,0.006780549],"genre_scores_gemma":[0.9967198,0.0007765116,0.0000545834,0.0001487525,0.00006531954,0.00002447889,0.00004975701,0.00002347858,0.002137326],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0933261,"threshold_uncertainty_score":0.5668549,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02606967109274703,"score_gpt":0.2895967038518746,"score_spread":0.2635270327591275,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}