{"id":"W2962103718","doi":"10.1139/cjm-2019-0128","title":"The evolving nature of <i>Bordetella pertussis</i> in Ontario, Canada, 2009–2017: strains with shifting genotypes and pertactin deficiency","year":2019,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Public Health Ontario; Public Health Agency of Canada","funders":"","keywords":"Pertactin; Bordetella pertussis; Genotype; Pertussis toxin; Virulence; Biology; Microbiology; Filamentous haemagglutinin adhesin; Molecular epidemiology; Whooping cough; Pertussis vaccine; Strain (injury); Virology; Gene; Genetics; Antigen; Vaccination; Immunization; Bacteria; G protein","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003691093,0.0003836917,0.0002995349,0.001331605,0.002479359,0.001286688,0.0008340148,0.0003899721,0.0008184802],"category_scores_gemma":[0.0009519422,0.0003586758,0.0003317455,0.002737144,0.0008776092,0.0004872943,0.0006423165,0.0005130916,0.0001531309],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.03191117,"about_ca_system_score_gemma":0.03272436,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9935799,"about_ca_topic_score_gemma":0.9958475,"domain_scores_codex":[0.9992174,0.00002678499,0.00003789639,0.00009256843,0.000301222,0.0003240923],"domain_scores_gemma":[0.9983767,0.00003212284,0.0003549314,0.00003066329,0.0008747911,0.0003307511],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000195944,0.00002291638,0.9855392,0.00006002056,0.00003425522,0.0004739669,0.002632905,0.000129913,0.00360451,0.000107962,0.000879226,0.006319148],"study_design_scores_gemma":[0.000002174264,0.00001831659,0.9967858,0.00001238675,0.000008808753,0.0001043299,0.001585561,0.0000780528,0.0001618023,0.000006811857,0.001230273,0.000005656634],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947831,0.0006723099,0.00008537204,0.0003491204,0.00001253698,0.0000302903,0.001769185,0.000007704727,0.002290233],"genre_scores_gemma":[0.99699,0.0005813344,0.000135439,0.0001266872,0.000007964504,0.00000828375,0.001166648,0.000004398576,0.0009791787],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03191117,"threshold_uncertainty_score":0.2315328,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004643996460034325,"score_gpt":0.1799913157648852,"score_spread":0.1753473193048508,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}