{"id":"W2962603824","doi":"10.1094/pdis-03-19-0563-re","title":"Pathogenicity and a TaqMan Real-Time PCR for Specific Detection of <i>Pantoea allii</i>, a Bacterial Pathogen of Onions","year":2019,"lang":"en","type":"article","venue":"Plant Disease","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University; Canadian Food Inspection Agency; International Development Research Centre","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; TaqMan; Pathogen; Pantoea; Inoculation; Microbiology; Botany; Phylogenetic tree; Gene; 16S ribosomal RNA; Polymerase chain reaction; Genetics; Horticulture","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000175868,0.0001562844,0.0003259622,0.00001689393,0.00008030069,0.00001577006,0.0001317134,0.00006135828,0.0001120687],"category_scores_gemma":[0.00004392093,0.00007257197,0.0001339013,0.00009754709,0.00005745815,0.00007828182,0.00007762312,0.0000368962,0.00001103399],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001166573,"about_ca_system_score_gemma":0.0000132252,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006135544,"about_ca_topic_score_gemma":0.0001086545,"domain_scores_codex":[0.9989518,0.00006833171,0.0002947177,0.0003114549,0.0001436543,0.0002300709],"domain_scores_gemma":[0.9992553,0.000269697,0.0001916482,0.00008508997,0.00005737272,0.0001409043],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008796431,0.0001074325,0.005695471,0.00005399263,0.0000281303,0.00000365932,0.00004266927,3.740464e-7,0.990981,0.00004394981,0.00008758737,0.002076095],"study_design_scores_gemma":[0.0008217312,0.0005380611,0.9332024,0.0001064614,0.0001464346,0.00001565639,0.000100952,0.0001608336,0.0552857,0.00022951,0.009013987,0.0003782667],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9760962,0.0001590554,0.000002371683,0.00005652983,0.000144059,0.0005754061,0.02286032,0.00003113231,0.00007492527],"genre_scores_gemma":[0.9983017,0.0004288919,0.00008645774,0.00001185403,0.0001307271,0.00003505446,0.0009519673,0.000001823215,0.00005155726],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9356953,"threshold_uncertainty_score":0.2959399,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01288758688713023,"score_gpt":0.1810134658700785,"score_spread":0.1681258789829483,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}