{"id":"W2962868134","doi":"10.1016/j.vaccine.2019.05.003","title":"Streptococcus pneumoniae serotype 3 is masking PCV13-mediated herd immunity in Canadian adults hospitalized with community acquired pneumonia: A study from the Serious Outcomes Surveillance (SOS) Network of the Canadian immunization research Network (CIRN)","year":2019,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saint John Regional Hospital; Ottawa Hospital; McGill University Health Centre; University of Ottawa; McMaster University; Mount Sinai Hospital; Vancouver General Hospital; Public Health Ontario; Centre Hospitalier Universitaire de Sherbrooke; University of British Columbia; Izaak Walton Killam Health Centre; Centre hospitalier universitaire de Québec; Nova Scotia Health Authority; University of Toronto; Dalhousie University","funders":"Canadian Institutes of Health Research; Canadian Immunization Research Network","keywords":"Streptococcus pneumoniae; Medicine; Herd immunity; Serotype; Pneumonia; Pneumococcal conjugate vaccine; Community-acquired pneumonia; Pneumococcal pneumonia; Sputum; Sputum culture; Immunization; Immunology; Intensive care unit; Pneumococcal disease; Immunity; Blood culture; Internal medicine; Vaccination; Microbiology; Antibody; Antibiotics; Biology; Immune system; Tuberculosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007159496,0.0007640178,0.0005120119,0.001013581,0.002233359,0.001162647,0.001363716,0.0008260974,0.002103233],"category_scores_gemma":[0.002302445,0.0005041973,0.001111691,0.002618049,0.0005807412,0.0005261122,0.0008231637,0.001027005,0.000263503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01437271,"about_ca_system_score_gemma":0.02013103,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9720495,"about_ca_topic_score_gemma":0.9817551,"domain_scores_codex":[0.9989452,0.00006068403,0.00006743979,0.0001521471,0.0003024425,0.0004720836],"domain_scores_gemma":[0.9987796,0.00006294719,0.0002741453,0.00006139052,0.0004870553,0.0003347846],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001484651,0.00004620429,0.9965369,0.00003282799,0.00007981399,0.00004847005,0.0003061057,0.00003187076,0.00009167044,0.00002746525,0.0007366106,0.001913623],"study_design_scores_gemma":[0.00001167902,0.00004054232,0.9989797,0.00001973351,0.00004929721,0.00004830805,0.0003834092,0.00007536366,0.00002414662,0.000007800725,0.0003531351,0.000006748776],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938724,0.000624294,0.00005472575,0.0002152256,0.00001502897,0.00005497065,0.003562754,0.000006953273,0.001593695],"genre_scores_gemma":[0.9977409,0.0002925249,0.00006152009,0.0001509978,0.00001108699,0.0000171137,0.001434563,0.000002805461,0.0002886235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02795053,"threshold_uncertainty_score":0.1042818,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01748526559271815,"score_gpt":0.281781464074964,"score_spread":0.2642961984822459,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}