{"id":"W2963024031","doi":"10.3390/toxins11070426","title":"Comparative Analysis of Listeria monocytogenes Plasmids and Expression Levels of Plasmid-Encoded Genes during Growth under Salt and Acid Stress Conditions","year":2019,"lang":"en","type":"article","venue":"Toxins","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates Bio Solutions","keywords":"Plasmid; Listeria monocytogenes; Biology; Microbiology; Gene; Escherichia coli; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000716326,0.0001923294,0.0004647391,0.0001453443,0.00006477731,0.00001558498,0.0001498547,0.0001478522,0.00005815895],"category_scores_gemma":[0.00001175029,0.0001812965,0.00009190052,0.0001708483,0.0002090591,0.00001551996,0.0003345409,0.00004391781,9.001528e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001307486,"about_ca_system_score_gemma":0.00003706386,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002116789,"about_ca_topic_score_gemma":0.0000785077,"domain_scores_codex":[0.9988943,0.00008268238,0.0003475053,0.0003829219,0.0001252182,0.0001673859],"domain_scores_gemma":[0.9992152,0.00003305449,0.0002220282,0.0003514979,0.0001028355,0.00007538268],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002055468,0.00005064204,0.03102878,0.0001045072,0.0005775897,5.856912e-7,0.0002798229,0.0007960206,0.9667972,0.0001329333,0.000007430628,0.00001899146],"study_design_scores_gemma":[0.0006656201,0.0001556279,0.1241934,0.00003217695,0.0002017654,0.000004478934,0.0003856533,0.0002209067,0.8739137,0.0000356558,0.00002315483,0.0001678889],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972781,0.0006666828,0.0002701082,0.00001611718,0.0000789635,0.0001933614,0.001190618,0.000008513216,0.0002975526],"genre_scores_gemma":[0.9987363,0.0001971362,0.0007045934,0.00002143716,0.00002819386,0.00001242029,0.0001824981,0.0000138604,0.0001035713],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0931646,"threshold_uncertainty_score":0.7393057,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05627503532809607,"score_gpt":0.3252234513108465,"score_spread":0.2689484159827504,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}