{"id":"W2963056293","doi":"10.1128/jvi.00765-19","title":"Frog Virus 3 Genomes Reveal Prevalent Recombination between Ranavirus Lineages and Their Origins in Canada","year":2019,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Laurentian University; Trent University","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Trillium Foundation; Government of Canada","keywords":"Ranavirus; Biology; Amphibian; Bufo marinus; Genome; Virus; Zoology; Virology; Evolutionary biology; Ecology; Genetics; Toad; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002993376,0.00008598209,0.0003744217,0.0001703872,0.00002101464,0.000004944224,0.00004561006,0.00006912523,0.0001147335],"category_scores_gemma":[0.00003386588,0.00006047664,0.00004881831,0.00008663222,0.00002008253,0.00006991596,0.00001602682,0.0003146632,0.000004496128],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003692076,"about_ca_system_score_gemma":0.0003299421,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.1065447,"about_ca_topic_score_gemma":0.1264261,"domain_scores_codex":[0.9992351,0.00008235046,0.0003697521,0.00009074798,0.00008617315,0.0001358942],"domain_scores_gemma":[0.9994773,0.00009545106,0.0002018198,0.0000845836,0.00006029306,0.00008050676],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001396274,0.00005694177,0.9732672,0.00003129903,0.00009259971,0.00003351574,0.0001194817,0.00003495745,0.01324444,0.00002414741,0.0003263912,0.01262938],"study_design_scores_gemma":[0.002126712,0.00124199,0.9770086,0.00004499207,0.00005930727,0.000210172,0.00008817693,0.0001234868,0.002853061,0.0001576806,0.01601274,0.00007310111],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968491,0.001096018,0.00002400208,0.001289769,0.0004489474,0.0001296978,0.00000865978,0.000002841736,0.0001509253],"genre_scores_gemma":[0.9986471,0.0006386405,0.00005875375,0.0002744208,0.0001869337,0.00000104609,0.000002541855,0.000008101323,0.0001824604],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01988144,"threshold_uncertainty_score":0.8994049,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01639469442230164,"score_gpt":0.2674215600019704,"score_spread":0.2510268655796687,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}