{"id":"W2963325483","doi":"10.1371/journal.pone.0209535","title":"How to build a fruit: Transcriptomics of a novel fruit type in the Brassiceae","year":2019,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant Reproductive Biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Transcriptome; Silique; Gene; Brassicaceae; Phenotype; Arabidopsis; Genetics; De novo transcriptome assembly; Botany; Gene expression; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001778821,0.00009865811,0.0001781549,0.00003935436,0.00001051812,0.000009035405,0.0002881039,0.0001122524,0.000007431163],"category_scores_gemma":[0.0001481201,0.00007498771,0.00003646705,0.0001291409,0.00003467879,0.000002665722,0.00004631515,0.00009222783,0.0000123487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008507822,"about_ca_system_score_gemma":0.00004096704,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001799887,"about_ca_topic_score_gemma":0.00007767508,"domain_scores_codex":[0.999253,0.00004038768,0.0001148032,0.0003114183,0.000108395,0.0001719813],"domain_scores_gemma":[0.9994046,0.00001774484,0.00004597296,0.00043255,0.00007188413,0.00002725973],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001504503,0.0005598416,0.0093101,0.00002890197,0.00007852958,6.606739e-7,0.000155398,0.000003379897,0.9892711,0.0001709633,0.0001854645,0.00008520806],"study_design_scores_gemma":[0.0006163422,0.0006478907,0.01514299,0.00003712313,0.00003213002,0.000006935444,0.0001277013,0.00001995811,0.9747458,0.00002961528,0.00843554,0.0001580052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968441,0.0002394302,0.0000886494,0.001760726,0.00005675464,0.0003999214,0.00005564737,0.000004329621,0.0005504175],"genre_scores_gemma":[0.9972502,0.00003690979,0.001298471,0.0005338374,0.0001202178,0.00001580065,0.00004990072,0.00001115429,0.0006835305],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01452533,"threshold_uncertainty_score":0.3057911,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0366183138178904,"score_gpt":0.2326128944315677,"score_spread":0.1959945806136773,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}