{"id":"W2963335353","doi":"10.1101/710095","title":"Restriction Enzyme Based Enriched L1Hs sequencing (REBELseq)","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Douglas Mental Health University Institute","funders":"National Alliance for Research on Schizophrenia and Depression; Brain and Behavior Research Foundation","keywords":"Retrotransposon; Subfamily; Biology; Interspersed repeat; Genome; Human genome; Genetics; Mobile genetic elements; Alu element; Retroposon; DNA sequencing; Computational biology; DNA; Transposable element; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001160918,0.001222853,0.00073774,0.001592575,0.0006218046,0.0008405308,0.0009082417,0.0008650396,0.007822944],"category_scores_gemma":[0.001523194,0.0006185427,0.0009234036,0.0009006145,0.0004771042,0.0004104305,0.0008676254,0.00156483,0.007679871],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003702754,"about_ca_system_score_gemma":0.000400557,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008990871,"about_ca_topic_score_gemma":0.003495324,"domain_scores_codex":[0.99875,0.0002056243,0.00007917657,0.0005680316,0.0002475858,0.0001496521],"domain_scores_gemma":[0.9990305,0.0002878921,0.0001455983,0.0003061418,0.0001496847,0.00008017074],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003606103,0.00006998473,0.002501776,0.0002296226,0.00009106054,0.0002192385,0.0001986765,0.0006307507,0.9642323,0.001026922,0.00203187,0.02840728],"study_design_scores_gemma":[0.0000641408,0.0003058388,0.01454917,0.00004659659,0.0001282603,0.0009993669,0.0001020166,0.009748072,0.9373544,0.0008256072,0.03582183,0.00005468071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3193454,0.002022549,0.6144597,0.0003222791,0.0002367382,0.001301482,0.03377132,0.01373935,0.01480117],"genre_scores_gemma":[0.2366454,0.0010637,0.6864552,0.0009127203,0.00008038955,0.0013082,0.05156336,0.003371191,0.0185998],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.007822944,"threshold_uncertainty_score":0.02617031,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0208324397332744,"score_gpt":0.2032882765392465,"score_spread":0.1824558368059721,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}