{"id":"W2963949067","doi":"10.1371/journal.ppat.1007959","title":"SopF, a phosphoinositide binding effector, promotes the stability of the nascent Salmonella-containing vacuole","year":2019,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Infection and Immunity; Australian Research Council; Medical Research Council; National Institutes of Health; National Institute of Allergy and Infectious Diseases; National Health and Medical Research Council; Universidade Nova de Lisboa; Monash University; Universität Basel; Burroughs Wellcome Fund","keywords":"Biology; Effector; Vacuole; Cell biology; Phosphatidylinositol; Salmonella enterica; Internalization; Secretion; Type three secretion system; Salmonella; Biochemistry; Mutant; Bacteria; Kinase; Cytoplasm; Cell","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004161229,0.0001666639,0.0002101886,0.00001662812,0.0001588982,0.00002375679,0.0003750842,0.00007432705,0.00004044261],"category_scores_gemma":[0.0004120258,0.00009495456,0.0001722538,0.0001201163,0.0001405261,0.000003494067,0.0005163254,0.0001396027,0.00002636728],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003607566,"about_ca_system_score_gemma":0.00008927441,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002591051,"about_ca_topic_score_gemma":0.00002592381,"domain_scores_codex":[0.9986011,0.000233655,0.0002091151,0.0003364371,0.0002685679,0.0003511446],"domain_scores_gemma":[0.9989125,0.00009040808,0.0001159145,0.0007117591,0.0001221735,0.00004725339],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006734952,0.00006464579,0.1948005,0.0000660357,0.0001082806,9.23116e-7,0.0002603114,0.000002088301,0.8044482,0.000007528067,0.00004271594,0.0001314342],"study_design_scores_gemma":[0.0003135398,0.0002806665,0.07975101,0.00005401768,0.00003009392,0.000002118714,0.000280158,0.00005465543,0.9187701,0.000009167423,0.0003407985,0.0001136189],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978953,0.000420297,0.000008559461,0.0002120079,0.0001295263,0.0008720544,0.0001073317,0.00001153044,0.0003434028],"genre_scores_gemma":[0.9995617,0.00005000391,0.00007328578,0.00005229722,0.00007362415,0.00005548673,0.00002151042,0.00002262928,0.00008950004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1150495,"threshold_uncertainty_score":0.3872135,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01515516376067205,"score_gpt":0.2377590831126124,"score_spread":0.2226039193519403,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}