{"id":"W2963949067","doi":"10.1371/journal.ppat.1007959","title":"SopF, a phosphoinositide binding effector, promotes the stability of the nascent Salmonella-containing vacuole","year":2019,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Infection and Immunity; Australian Research Council; Medical Research Council; National Institutes of Health; National Institute of Allergy and Infectious Diseases; National Health and Medical Research Council; Universidade Nova de Lisboa; Monash University; Universität Basel; Burroughs Wellcome Fund","keywords":"Biology; Effector; Vacuole; Cell biology; Phosphatidylinositol; Salmonella enterica; Internalization; Secretion; Type three secretion system; Salmonella; Biochemistry; Mutant; Bacteria; Kinase; Cytoplasm; Cell","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008036878,0.000331111,0.0001782074,0.0001792136,0.0001337733,0.0002777213,0.0001222592,0.000283268,0.0007313482],"category_scores_gemma":[0.0001052794,0.0001189284,0.0002376213,0.00009839115,0.0001586721,0.0002108495,0.000265769,0.0002923094,0.0003824751],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002973741,"about_ca_system_score_gemma":0.0001281561,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003375983,"about_ca_topic_score_gemma":0.0003919284,"domain_scores_codex":[0.9999315,0.000008605403,0.000004679266,0.00001611001,0.00001984827,0.00001926116],"domain_scores_gemma":[0.9999229,0.00001309321,0.00002333007,0.000007739359,0.00001152575,0.00002141445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000564178,0.00000495272,0.0001222848,0.00001911173,0.0000014107,0.00002281939,0.000004696682,0.0000278512,0.9990369,0.00005668163,0.00002254254,0.000624188],"study_design_scores_gemma":[0.000006269123,0.00008675479,0.003776027,0.000004343721,0.000005968267,0.0002486641,0.00001678431,0.0006905952,0.993083,0.0000506209,0.002028047,0.000002937797],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931601,0.001236142,0.003870114,0.000083507,0.00002215564,0.00001531803,0.0002557679,0.0001796382,0.0011772],"genre_scores_gemma":[0.9954596,0.0005527643,0.001718755,0.00002611279,0.000006448027,0.000009275371,0.0004722245,0.00002568386,0.001729146],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007313482,"threshold_uncertainty_score":0.002446592,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01515516376067205,"score_gpt":0.2377590831126124,"score_spread":0.2226039193519403,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}