{"id":"W2964023031","doi":"10.1038/s41598-019-46609-7","title":"Large-scale viral genome analysis identifies novel clinical associations between hepatitis B virus and chronically infected patients","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto General Hospital","funders":"","keywords":"Viral load; HBeAg; Virology; Hepatitis B virus; Biology; Genetic variation; Viral hepatitis; Hepatitis B; Virus; Mutation; Viral evolution; Immunology; Medicine; Genome; Genetics; Gene; HBsAg","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002395312,0.000245309,0.001035903,0.0004607678,0.0004677729,0.0002548514,0.0001087269,0.0002074997,0.0003385945],"category_scores_gemma":[0.001339167,0.0002267494,0.0004106352,0.001269498,0.0003475468,0.0002913552,0.0003244214,0.0003127663,0.0001767043],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002115005,"about_ca_system_score_gemma":0.0002396259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001332422,"about_ca_topic_score_gemma":0.009772178,"domain_scores_codex":[0.9955959,0.0001111666,0.001553906,0.001170939,0.001006244,0.0005618161],"domain_scores_gemma":[0.9970031,0.000198198,0.0007242173,0.001008056,0.0007668243,0.0002995425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000005978214,0.0003766226,0.9951046,0.00002343506,0.0009479038,0.00003091606,0.0004234925,0.000005627674,0.001652724,0.00000765307,0.001232932,0.0001881382],"study_design_scores_gemma":[0.000751207,0.0001417539,0.9897137,0.00002706339,0.001217867,0.000004680871,0.00001263056,0.0001411051,0.000174254,0.0001682519,0.007416165,0.0002312642],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949185,0.0001172662,0.0003540943,0.000110671,0.002468367,0.0007506516,0.0002967583,0.0001254743,0.0008582376],"genre_scores_gemma":[0.9943845,0.00007389355,0.0005323563,0.0001060113,0.000158794,0.00002068022,0.001502689,0.00002733245,0.003193696],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008439756,"threshold_uncertainty_score":0.9246572,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02183192881679077,"score_gpt":0.3122610738816335,"score_spread":0.2904291450648428,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}