{"id":"W2964261497","doi":"10.1093/ve/vez020","title":"Evolutionary dynamics and molecular epidemiology of West Nile virus in New York State: 1999–2015","year":2019,"lang":"en","type":"article","venue":"Virus Evolution","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Center for AIDS Research, University of Washington; National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Biology; Clade; Evolutionary biology; Genetic diversity; Dominance (genetics); Flavivirus; Genetics; Phylogenetics; West Nile virus; Deep sequencing; Virology; Genome; Virus; Population; Gene; Demography","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002990444,0.0001638894,0.0004685841,0.00022081,0.00002537167,0.000002536445,0.00007998366,0.0001450932,0.0001955744],"category_scores_gemma":[0.0001935447,0.0001575835,0.0001037267,0.0003017302,0.00008397341,0.000078257,0.00005090509,0.000172934,0.00009100909],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002897349,"about_ca_system_score_gemma":0.0003324613,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007423605,"about_ca_topic_score_gemma":0.0008047605,"domain_scores_codex":[0.9985486,0.0001344256,0.0004589024,0.0003544818,0.0001743997,0.0003291973],"domain_scores_gemma":[0.9991119,0.0001075696,0.0001664308,0.0003560543,0.00006371368,0.000194345],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001361541,0.0003479334,0.9381561,0.0002267468,0.00008747757,0.00001900634,0.00009603724,0.0009028104,0.02595428,0.02032951,0.006156329,0.006362232],"study_design_scores_gemma":[0.002667986,0.0004611803,0.9259668,0.0001345663,0.000096847,0.00002233601,0.00008987387,0.06476223,0.0001537286,0.00366417,0.001797883,0.0001823834],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.964827,0.02903575,0.003987452,0.0005933155,0.0002521782,0.0005886604,0.000121553,0.00003831988,0.0005557809],"genre_scores_gemma":[0.9979983,0.0002290117,0.0004645429,0.0003164613,0.00007261254,0.00001386294,0.0001217019,0.00002068676,0.0007628099],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06385942,"threshold_uncertainty_score":0.999186,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0114244794184691,"score_gpt":0.2700945439272583,"score_spread":0.2586700645087893,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}