{"id":"W2964261497","doi":"10.1093/ve/vez020","title":"Evolutionary dynamics and molecular epidemiology of West Nile virus in New York State: 1999–2015","year":2019,"lang":"en","type":"article","venue":"Virus Evolution","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Center for AIDS Research, University of Washington; National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Biology; Clade; Evolutionary biology; Genetic diversity; Dominance (genetics); Flavivirus; Genetics; Phylogenetics; West Nile virus; Deep sequencing; Virology; Genome; Virus; Population; Gene; Demography","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002583833,0.0001368954,0.00009871669,0.0006025023,0.0002706014,0.0003434439,0.0002032217,0.0001680775,0.001305365],"category_scores_gemma":[0.0004404828,0.000107704,0.0001160181,0.0004411091,0.0001967071,0.0002968821,0.0003475476,0.0003078933,0.0001127848],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001056086,"about_ca_system_score_gemma":0.0007197278,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.15422,"about_ca_topic_score_gemma":0.2837726,"domain_scores_codex":[0.9999112,0.0000136108,0.000008121296,0.00002647177,0.00002100315,0.00001963187],"domain_scores_gemma":[0.9997657,0.0000193162,0.0001111369,0.00001040726,0.00005000961,0.00004331361],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000653918,0.00002795982,0.9887297,0.00002240774,0.00005959035,0.00006983541,0.0002972485,0.0004624133,0.002195829,0.0001425436,0.0008853165,0.007041866],"study_design_scores_gemma":[0.000001682775,0.00001427701,0.9978896,0.00001360315,0.000006117461,0.00004603976,0.0002756685,0.0008083988,0.000146333,0.00002056541,0.0007748839,0.000002814554],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997991,0.0002915504,0.0001738795,0.00009377651,0.000007889078,0.000007842037,0.0009110672,0.000003749294,0.0005193172],"genre_scores_gemma":[0.9971131,0.0003483291,0.0002120947,0.00002917302,0.000008029869,0.00001224714,0.001602143,0.000002034202,0.0006728122],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.15422,"threshold_uncertainty_score":0.3066447,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0114244794184691,"score_gpt":0.2700945439272583,"score_spread":0.2586700645087893,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}