{"id":"W2964687200","doi":"10.3389/fmicb.2019.01862","title":"Catabolism of Alkylphenols in Rhodococcus via a Meta-Cleavage Pathway Associated With Genomic Islands","year":2019,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Genome British Columbia; Génome Québec; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Catabolism; Rhodococcus; Biology; Metagenomics; Cleavage (geology); Chemistry; Genetics; Computational biology; Biochemistry; Bacteria; Metabolism; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001147943,0.0004871487,0.0003502589,0.0004147473,0.0001454426,0.0004582491,0.0002327412,0.000307923,0.0004357099],"category_scores_gemma":[0.0002482003,0.0002699675,0.0005248164,0.0003489093,0.0001845798,0.0002230222,0.0005228469,0.0004940964,0.000545122],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002967437,"about_ca_system_score_gemma":0.0004056999,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003334117,"about_ca_topic_score_gemma":0.002706072,"domain_scores_codex":[0.9998255,0.00001435226,0.00001857275,0.00005387864,0.00004856739,0.00003917632],"domain_scores_gemma":[0.9998236,0.00002634429,0.00005641669,0.00002961403,0.00004156888,0.00002246802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002677557,0.000008758151,0.0009401933,0.00002665198,0.000004701596,0.00005775778,0.00003036388,0.00005085764,0.9976788,0.00002848866,0.00001293344,0.001133701],"study_design_scores_gemma":[0.00001596339,0.0002279553,0.06737313,0.00003378135,0.0000822402,0.0009767853,0.0004545349,0.002588605,0.9244109,0.0001921313,0.003609782,0.00003412904],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939469,0.0005347144,0.002816287,0.00008968913,0.000008109011,0.00003379947,0.001183148,0.0001225262,0.001264895],"genre_scores_gemma":[0.9836636,0.0005150794,0.008847359,0.0001087421,0.000007248,0.00009645235,0.003553453,0.00007669463,0.003131512],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003334117,"threshold_uncertainty_score":0.006629407,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00683311068721045,"score_gpt":0.1812099294730977,"score_spread":0.1743768187858872,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}