{"id":"W2964733764","doi":"10.7554/elife.45199","title":"Natural selection and repeated patterns of molecular evolution following allopatric divergence","year":2019,"lang":"en","type":"article","venue":"eLife","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Natural Science Foundation of China; National Science Foundation","keywords":"Allopatric speciation; Negative selection; Biology; Evolutionary biology; Divergence (linguistics); Clade; Natural selection; Selection (genetic algorithm); Genetic algorithm; Abundance (ecology); Genetics; Genome; Phylogenetics; Gene; Ecology; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005129289,0.00006115088,0.00006687907,0.00003058879,0.00002996037,0.000005318502,0.00005105069,0.00006855751,0.00001769217],"category_scores_gemma":[0.00001920301,0.00006248749,0.00004744725,0.00006797332,0.000005827441,0.000003325182,0.00005456752,0.00003948037,0.000003869486],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005986934,"about_ca_system_score_gemma":0.00001380341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004765112,"about_ca_topic_score_gemma":0.000009883871,"domain_scores_codex":[0.9995328,0.00002560949,0.00008695733,0.0001604148,0.0001146548,0.00007959107],"domain_scores_gemma":[0.9997773,0.000001954039,0.00004984425,0.00009334087,0.00005202108,0.00002551797],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001283336,0.000003082485,0.4987963,0.000008059507,0.00001901939,4.292584e-7,0.00001795059,0.0002308208,0.5006903,0.00002598955,0.00002729586,0.0001678584],"study_design_scores_gemma":[0.0004061521,0.0001050785,0.7269342,0.0000103039,0.00002699803,0.000006683804,0.00005878815,0.0002583638,0.2711849,0.00001859264,0.0008675878,0.0001224131],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997829,0.0004885228,0.001282523,0.00001193651,0.0002274812,0.00008213976,0.0000057198,0.000006071537,0.00006666358],"genre_scores_gemma":[0.9993057,0.00002813633,0.0002757436,0.00004447798,0.00002506137,6.277616e-7,0.00005184801,0.000004230111,0.0002641739],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2295055,"threshold_uncertainty_score":0.2548166,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003276788580294199,"score_gpt":0.2030415146493593,"score_spread":0.1997647260690651,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}