{"id":"W2964857407","doi":"10.1038/s41598-019-47445-5","title":"X-ray Crystallographic Structure and Oligomerization of Gloeobacter Rhodopsin","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Photoreceptor and optogenetics research","field":"Neuroscience","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Toronto","funders":"Argonne National Laboratory; Natural Sciences and Engineering Research Council of Canada; Office of Science; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research; University of Toronto; Canada Excellence Research Chairs, Government of Canada; U.S. Department of Energy","keywords":"Chemistry; Pentamer; Site-directed spin labeling; Transmembrane domain; Rhodopsin; Crystallography; Crystal structure; Structural motif; Transmembrane protein; Resonance Raman spectroscopy; Raman spectroscopy; Stereochemistry; Retinal; Amino acid; Membrane","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003840111,0.00009316755,0.0001385276,0.0002442325,0.0001062653,0.0001592514,0.0001337708,0.00005688572,0.0004685608],"category_scores_gemma":[0.0001991868,0.00007783636,0.00004270956,0.000743504,0.0003723246,0.0001492112,0.00009982654,0.00008654909,0.000006550771],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001018367,"about_ca_system_score_gemma":0.00006447489,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007515852,"about_ca_topic_score_gemma":0.000003092425,"domain_scores_codex":[0.9982389,0.00006748008,0.0002733937,0.0006108081,0.0005772126,0.000232184],"domain_scores_gemma":[0.9990793,0.00004239246,0.0001550332,0.0005373069,0.0000904577,0.00009545341],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000005980805,0.00001619277,0.04204475,0.00002777776,0.000001721559,0.00001210755,0.0001328095,0.00003826068,0.9572085,0.00006606488,0.00007665818,0.0003691399],"study_design_scores_gemma":[0.0000873124,0.0000338463,0.01822066,0.00001362758,0.000003194761,0.00005181281,0.00001477776,0.0002133484,0.9726372,0.002243561,0.00638457,0.00009612575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959458,0.00003847873,0.00003402002,0.00001716614,0.002362846,0.0002926554,0.000009695123,0.00001975079,0.001279575],"genre_scores_gemma":[0.9986066,0.00001267508,0.0001654408,0.00001909824,0.00001497033,0.000002522465,0.00001124952,0.000010319,0.001157121],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02382409,"threshold_uncertainty_score":0.5130413,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0159664034732865,"score_gpt":0.2633385140535696,"score_spread":0.2473721105802831,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}