{"id":"W2964881489","doi":"10.1093/nar/gkz640","title":"Structural and phenotypic analysis of Chikungunya virus RNA replication elements","year":2019,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Medical Research Council Canada; Royal Society","keywords":"Biology; Alphavirus; Replicon; Viral replication; Genetics; Genome; Chikungunya; Origin of replication; Reverse genetics; Virus; Virology; RNA virus; RNA; Semliki Forest virus; Togaviridae; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008539364,0.0001657839,0.0001068349,0.0001417932,0.0001104775,0.0001725954,0.0001170868,0.0001463237,0.0009099992],"category_scores_gemma":[0.0002006777,0.0001156087,0.000164807,0.0000886239,0.0001585526,0.0001440644,0.0001389391,0.0003825737,0.0003198195],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001694568,"about_ca_system_score_gemma":0.0001179464,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009132648,"about_ca_topic_score_gemma":0.0009519291,"domain_scores_codex":[0.9999217,0.00001222708,0.000006297083,0.00001994738,0.00002252877,0.00001731144],"domain_scores_gemma":[0.9998631,0.00004616461,0.00002309586,0.0000201689,0.00002133778,0.00002600953],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002175838,0.000005181098,0.000269047,0.000009874554,0.00000105361,0.00001699828,0.00001191722,0.00002351245,0.9993198,0.00002112067,0.000003654801,0.0002960149],"study_design_scores_gemma":[0.000006776671,0.0002720117,0.03786486,0.000004961882,0.000017299,0.000634175,0.00008043005,0.0009664377,0.9589769,0.00006072748,0.001108452,0.000007106431],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965466,0.000284411,0.001699543,0.00002269763,0.000005748927,0.00001332191,0.0003485237,0.00001683977,0.001062387],"genre_scores_gemma":[0.9955272,0.0001816019,0.002021241,0.00001708374,0.000002381433,0.0000137591,0.0008942048,0.0000207759,0.00132179],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009132648,"threshold_uncertainty_score":0.003044307,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03105283016254816,"score_gpt":0.3654122115093228,"score_spread":0.3343593813467747,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}