{"id":"W2965222909","doi":"10.1111/1462-2920.14760","title":"Gene pool transmission of multidrug resistance among <i>Campylobacter</i> from livestock, sewage and human disease","year":2019,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":89,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Medical Research Council; Directorate for Biological Sciences; Ministerio de Economía y Competitividad; University of Bath; Biotechnology and Biological Sciences Research Council; Food Standards Agency; Medical Research Council Canada; Wellcome Trust","keywords":"Biology; Campylobacter; Campylobacter jejuni; Campylobacter coli; Antibiotic resistance; Mobile genetic elements; Multiple drug resistance; Microbiology; Tetracycline; Plasmid; Drug resistance; Gene; Genetics; Antibiotics; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001052094,0.0002115493,0.0003451918,0.00001041126,0.00009064913,0.000006913628,0.0002108532,0.0001659315,0.0009988325],"category_scores_gemma":[0.000005053318,0.0001004103,0.0001060154,0.00004058754,0.0003135839,0.00007160217,0.0001146167,0.0001280732,0.00006620885],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002591817,"about_ca_system_score_gemma":0.000002215663,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002355273,"about_ca_topic_score_gemma":0.00007743936,"domain_scores_codex":[0.9985932,0.0002213861,0.0003219286,0.0005295023,0.00004385935,0.00029018],"domain_scores_gemma":[0.9993792,0.0001854844,0.0001602584,0.0001184595,0.000003109767,0.0001534446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006335017,0.00006554252,0.3528263,0.000004157709,0.00001271621,0.00000302929,0.00003933503,0.000001028849,0.6461241,0.000007460028,0.00004409935,0.0008089221],"study_design_scores_gemma":[0.0003231052,0.0001325421,0.9226415,0.00002383264,0.00002198566,0.00000369154,0.00008031689,0.000003453687,0.07102715,0.0001877565,0.005350202,0.0002044852],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978102,0.0009410508,0.000004041891,0.0001514507,0.00007735402,0.0002970279,0.0006065979,0.00002339805,0.00008880645],"genre_scores_gemma":[0.997901,0.0001545471,0.0001413898,0.0002385784,0.00006364073,0.000008551767,0.000970374,0.000002682881,0.0005192932],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.575097,"threshold_uncertainty_score":0.9999144,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005144610542559566,"score_gpt":0.1753076104462263,"score_spread":0.1701629999036668,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}