{"id":"W2965682293","doi":"10.1128/msystems.00159-19","title":"Elucidating Syntrophic Butyrate-Degrading Populations in Anaerobic Digesters Using Stable-Isotope-Informed Genome-Resolved Metagenomics","year":2019,"lang":"en","type":"article","venue":"mSystems","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Wageningen University and Research; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Joint Genome Institute; Office of Science; U.S. Environmental Protection Agency; U.S. Department of Energy","keywords":"Metagenomics; Stable-isotope probing; Methanogenesis; Biology; Genome; Genetics; Bacteria; Gene; Microorganism","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002959861,0.0002478331,0.0003704873,0.000128795,0.0001409815,0.00007686084,0.0002319554,0.000134209,0.000008579797],"category_scores_gemma":[0.00004105682,0.0002482752,0.0001070358,0.0001754712,0.00003061249,0.00000412242,0.0001572795,0.00009995603,0.00001735617],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000113522,"about_ca_system_score_gemma":0.00010495,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005075206,"about_ca_topic_score_gemma":0.0004860557,"domain_scores_codex":[0.9983989,0.00007501263,0.0005203933,0.0004241451,0.0001223322,0.0004592315],"domain_scores_gemma":[0.9991872,0.00002093351,0.0002039017,0.0004530274,0.00005570212,0.00007918551],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002459187,0.00001729091,0.05957963,0.00006511151,0.00008121233,0.000002299093,0.0002002117,0.02929819,0.9104778,0.0001548884,0.000005583823,0.00009318985],"study_design_scores_gemma":[0.0159779,0.002263743,0.3748291,0.001142689,0.0007464379,0.0003096212,0.01397299,0.1047109,0.3770001,0.0005350711,0.09985162,0.008659858],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955003,0.001658012,0.0009844304,0.00001959252,0.0005496308,0.0006283505,0.00004366055,0.000007576491,0.0006085052],"genre_scores_gemma":[0.99739,0.00008576742,0.001773017,0.00004888705,0.0001805377,0.00003069829,0.0000811463,0.00004551338,0.000364447],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5334777,"threshold_uncertainty_score":0.999997,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04030466660655915,"score_gpt":0.2736466324792297,"score_spread":0.2333419658726706,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}