{"id":"W2966249418","doi":"10.1016/j.humimm.2019.07.154","title":"P101 Validation of two commercial buccal swabs for HLA typing by next generation sequencing","year":2019,"lang":"en","type":"article","venue":"Human Immunology","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"","keywords":"Buccal swab; Buccal administration; Human leukocyte antigen; Typing; Biology; Computational biology; Genetics; Bioinformatics; Antigen","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003811632,0.0002227625,0.0004328393,0.0001586112,0.0004069372,0.00002214333,0.0003408091,0.0003333447,0.0008241744],"category_scores_gemma":[0.00005007132,0.0002346587,0.000155036,0.0001228635,0.0002805164,0.0002186691,0.00008816035,0.0003047554,0.00030318],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008944272,"about_ca_system_score_gemma":0.0000807986,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003746989,"about_ca_topic_score_gemma":0.00001043078,"domain_scores_codex":[0.9983451,0.0002278402,0.0005793676,0.0003529273,0.00003280156,0.000462006],"domain_scores_gemma":[0.9990228,0.0001207753,0.0003134708,0.0004041475,0.000134437,0.000004395794],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000949989,0.00009629559,0.0003358857,0.00002447476,0.0001414009,1.359188e-7,0.0008428416,0.00006600611,0.9842587,0.007741511,0.0005202814,0.005877492],"study_design_scores_gemma":[0.005051878,0.0006618284,0.001388194,0.00005015173,0.00007640648,0.00002513222,0.0009962345,0.0001453705,0.9638495,0.0007642344,0.02655715,0.0004338859],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850653,0.01028329,0.001349522,0.00009143975,0.00146942,0.0005429987,0.00003148497,0.00006866843,0.001097822],"genre_scores_gemma":[0.996631,0.00004670885,0.00006092343,0.0001366086,0.00001610868,0.00005187246,0.001370581,0.00002925791,0.001656923],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02603687,"threshold_uncertainty_score":0.9569103,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05282123695132394,"score_gpt":0.2823082164980692,"score_spread":0.2294869795467453,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}