{"id":"W2966270208","doi":"10.1093/molbev/msz147","title":"The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion","year":2019,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; University of Alberta","funders":"H2020 European Research Council; Ministerstvo Školství, Mládeže a Tělovýchovy; Canada Research Chairs; National Institute of Environmental Health Sciences; Canadian Institutes of Health Research; Grantová Agentura České Republiky; Natural Sciences and Engineering Research Council of Canada; European Commission","keywords":"Biology; Mitochondrion; Endomembrane system; Peroxisome; Genome; Organelle; Cell biology; Mitochondrial DNA; Genetics; Cell; Gene; Computational biology; Golgi apparatus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002547962,0.00007976367,0.00008999933,0.0000183355,0.0001064041,0.000006378099,0.0002229516,0.0001301354,0.000003485286],"category_scores_gemma":[0.00003742341,0.00005252103,0.00004735959,0.0000716536,0.0003158493,0.000002270201,0.0001038357,0.000103773,0.000006342751],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001142182,"about_ca_system_score_gemma":0.00003945965,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00012897,"about_ca_topic_score_gemma":0.0002475976,"domain_scores_codex":[0.9992626,0.00019976,0.0001194099,0.000196597,0.00005429189,0.0001673936],"domain_scores_gemma":[0.999632,0.00002622688,0.00005167878,0.0002424027,0.00002652951,0.00002118359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001297454,0.0000349057,0.2515551,0.00001139822,0.00002367694,0.000002366485,0.00005456534,0.00004632662,0.725565,0.02242727,0.00003763478,0.0001120388],"study_design_scores_gemma":[0.0004007247,0.0003211716,0.9863732,0.000007027341,0.000009307379,0.00002441206,0.00008871299,0.0001427333,0.005326921,0.006178078,0.001019814,0.000107876],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944415,0.00216538,0.00241912,0.0002746034,0.00008199607,0.0002437798,0.00001861015,0.000001954126,0.0003530374],"genre_scores_gemma":[0.9995278,0.0001008178,0.00008724158,0.0001427175,0.0000218551,0.000008205465,0.00006562236,0.000002948798,0.00004277989],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7348182,"threshold_uncertainty_score":0.2141745,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009955955975770871,"score_gpt":0.244826785338881,"score_spread":0.2348708293631101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}