{"id":"W2966277491","doi":"10.1093/ofid/ofz431","title":"Genomic Epidemiology of Major Extraintestinal Pathogenic Escherichia coli Lineages Causing Urinary Tract Infections in Young Women Across Canada","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of Manitoba; Public Health Agency of Canada; Provincial Laboratory of Public Health; University of Alberta; BC Centre for Disease Control; Public Health Ontario; University of Guelph; University of British Columbia","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research; University of Toronto; University of British Columbia; McGill University","keywords":"Multilocus sequence typing; Biology; Epidemiology; Escherichia coli; Genome; Genetics; Medicine; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002122046,0.0002639926,0.0002086218,0.001399035,0.001570477,0.0007422189,0.0005084242,0.0002792,0.00135834],"category_scores_gemma":[0.0008633964,0.0001877933,0.000248556,0.002654838,0.0004237757,0.0001442695,0.0005827398,0.0002863827,0.000107271],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.009949027,"about_ca_system_score_gemma":0.01471445,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9866195,"about_ca_topic_score_gemma":0.989509,"domain_scores_codex":[0.9996005,0.00002620756,0.00002301566,0.00007438649,0.000130695,0.0001452853],"domain_scores_gemma":[0.9991689,0.00004008686,0.0001309707,0.00001609665,0.0004040088,0.0002399168],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003311586,0.000009119187,0.9934643,0.0000347183,0.00001636444,0.0001641323,0.0004264537,0.00008658539,0.0007369489,0.00005792869,0.0004758175,0.004494511],"study_design_scores_gemma":[0.000002439046,0.00001878198,0.997631,0.00003109502,0.00001220334,0.0001306349,0.001233574,0.0001617476,0.00009874175,0.00001503519,0.00065998,0.000004797468],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933307,0.001161597,0.0001880451,0.0002921076,0.000009111727,0.00004502584,0.003298405,0.00001271209,0.001662352],"genre_scores_gemma":[0.9974936,0.0007362263,0.0002590595,0.00009547167,0.000003081484,0.00000849903,0.000841514,0.000002700467,0.0005598036],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01338053,"threshold_uncertainty_score":0.07218558,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01381385526919588,"score_gpt":0.3051470647213962,"score_spread":0.2913332094522003,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}