{"id":"W2966304901","doi":"10.1101/719211","title":"Highly reduced genomes of protist endosymbionts show evolutionary convergence","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Killam Trusts; Gordon and Betty Moore Foundation","keywords":"Biology; Genome; Protist; Effector; Bacterial genome size; Flagellum; Gene; Endosymbiosis; Host (biology); Symbiosis; Comparative genomics; Genetics; Evolutionary biology; Bacteria; Genomics; Cell biology; Plastid; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002043865,0.0003394411,0.0004176208,0.001247638,0.0004627533,0.0008468307,0.000297689,0.0006235957,0.001336992],"category_scores_gemma":[0.0008367546,0.0002537731,0.0003123376,0.001008898,0.0004619589,0.0005863967,0.0008001892,0.0006522752,0.0005636963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003707773,"about_ca_system_score_gemma":0.0002562917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006231736,"about_ca_topic_score_gemma":0.0008318108,"domain_scores_codex":[0.9997131,0.00002092377,0.00002078891,0.0001366488,0.00006887591,0.00003968786],"domain_scores_gemma":[0.9993518,0.0001402339,0.0002156301,0.00007771535,0.000117394,0.00009723847],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006997166,0.00004020297,0.05692752,0.0004016926,0.0001888788,0.0004151474,0.0009319711,0.0005845329,0.9178834,0.0007323987,0.000370939,0.02082365],"study_design_scores_gemma":[0.00004013586,0.0003397296,0.9181334,0.0000680618,0.0002381649,0.002657577,0.0006920487,0.001311741,0.05352148,0.001181661,0.02174778,0.00006819025],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906259,0.002161413,0.002989972,0.0000896065,0.00001948427,0.00002094765,0.002724408,0.0001067927,0.001261567],"genre_scores_gemma":[0.9784065,0.001004551,0.006298301,0.0003020059,0.00003241455,0.00005466204,0.0125385,0.0001000437,0.001263081],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001336992,"threshold_uncertainty_score":0.004472673,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01655453423878814,"score_gpt":0.2020541618013788,"score_spread":0.1854996275625907,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}