{"id":"W2966361747","doi":"10.3389/fgene.2019.00665","title":"Comparative Genomic Analysis of Three Salmonid Species Identifies Functional Candidate Genes Involved in Resistance to the Intracellular Bacterium Piscirickettsia salmonis","year":2019,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada","funders":"Fondo de Fomento al Desarrollo Científico y Tecnológico; Comisión Nacional de Investigación Científica y Tecnológica; Fundação de Amparo à Pesquisa do Estado de São Paulo; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Genome British Columbia; Government of Canada; Ministerio de Economía, Fomento y Turismo, Chile; Universidad de Chile; Genome Canada","keywords":"Biology; Salmo; Genetics; Single-nucleotide polymorphism; SNP; Candidate gene; Gene; Zoology; Genotype; Fishery; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002280335,0.0002094231,0.0005387331,0.0004970094,0.00007172229,0.00002931613,0.0004101648,0.0001212759,0.0002731742],"category_scores_gemma":[0.000007868392,0.0001701514,0.0001370048,0.0008699761,0.0002015793,0.00004726005,0.000169638,0.0001671866,0.00009071796],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001086113,"about_ca_system_score_gemma":0.00004514238,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007966368,"about_ca_topic_score_gemma":0.007499989,"domain_scores_codex":[0.998653,0.0001454643,0.0004357927,0.0003823454,0.00006370783,0.0003196783],"domain_scores_gemma":[0.9992828,0.00003358148,0.0001615481,0.0004358972,0.00006604145,0.00002007125],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003603753,0.00008015578,0.5600786,0.00002979966,0.001269678,0.000003197551,0.001815285,0.003487012,0.3987742,0.00008552057,0.0339054,0.0001108141],"study_design_scores_gemma":[0.0006161184,0.00003303582,0.9091451,0.00002500906,0.0004297529,2.775702e-7,0.002940295,0.0001520046,0.03518365,0.00008091179,0.05114928,0.000244538],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9796048,0.01597309,0.001957402,0.0002556427,0.001146439,0.000551833,0.0001645071,0.00001089539,0.0003354024],"genre_scores_gemma":[0.9918238,0.0003348505,0.0005603581,0.0000904942,0.00002365393,0.00002293339,0.0004438976,0.00001220739,0.006687827],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3635905,"threshold_uncertainty_score":0.6938573,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01462190795681322,"score_gpt":0.216269810319582,"score_spread":0.2016479023627687,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}