{"id":"W2966523163","doi":"10.1101/717892","title":"Competition among <i>Gardnerella</i> subgroups from the human vaginal microbiome","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bacterial vaginosis; Competition (biology); Gardnerella vaginalis; Biology; Population; Biofilm; Microbiome; Dysbiosis; Microbiology; Demography; Ecology; Bacteria; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004527254,0.0002430293,0.0005869712,0.0002837551,0.0003632852,0.0007263996,0.0002092662,0.000489362,0.002075936],"category_scores_gemma":[0.00088411,0.0001700706,0.0003205625,0.000199756,0.0002021871,0.0003589485,0.0006635244,0.0003282796,0.0003320283],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002308274,"about_ca_system_score_gemma":0.0003711502,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00284937,"about_ca_topic_score_gemma":0.002528425,"domain_scores_codex":[0.9991701,0.0001923348,0.00005742392,0.0002203935,0.0001869002,0.000172908],"domain_scores_gemma":[0.9994873,0.000132055,0.0001127476,0.000036874,0.0001131926,0.0001178553],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001361654,0.0001303125,0.1209613,0.0001979198,0.00009654178,0.0002652519,0.000323186,0.000235101,0.8644622,0.0001865097,0.0002642725,0.01151567],"study_design_scores_gemma":[0.00006218901,0.00291139,0.8150991,0.00009748816,0.0002301164,0.002125243,0.003244965,0.005934129,0.1635397,0.0008427163,0.005837517,0.0000755389],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982039,0.0006459504,0.0005111485,0.0000625442,0.000007849077,0.00001194508,0.0001035994,0.000006209563,0.0004468328],"genre_scores_gemma":[0.9988282,0.0001101735,0.00050448,0.00006173403,0.000007668186,0.00001083241,0.0001858278,0.000004122663,0.0002869406],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00284937,"threshold_uncertainty_score":0.006944716,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0153052385632162,"score_gpt":0.2381917872633049,"score_spread":0.2228865487000887,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}